View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13947_high_7 (Length: 333)
Name: NF13947_high_7
Description: NF13947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13947_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 244492 - 244186
Alignment:
| Q |
20 |
gtttaagacaatcattctggaagggctaagaagatgataagaagaacgagaacgaccaaaagtacaaccttggagaggagcttcattatccatttccatc |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
244492 |
gtttaagacaatcattctagaagggctaagaagatgataagaagaacgagaacgaccaaaagtacaaccttggagaggagcttcattatccatttccatc |
244393 |
T |
|
| Q |
120 |
aacactttgtaaaagacatcaacattacaaggaagagccaaaggtccttggcagctataaccatattctgattcagcttcttcaagcaacatcttgaaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
244392 |
aacactttgtaaaagacatcaacattacaaggaagagccaaaggtccttggcagctataaccatattctgattcagcttcttcaagcaacatcttgaaca |
244293 |
T |
|
| Q |
220 |
aaggatgattagcatactcagttttgatcacaaacctttgcatttgaggtccaacgtacaccgaaaagcatccctccggggccactttctttcgtctata |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
244292 |
aaggatgattagcatactcagttttgatcacaaacctttgcatttgaggtccaacgtacaccgaaaagcatccctccggggccactttctttcgtctatt |
244193 |
T |
|
| Q |
320 |
ttcttcg |
326 |
Q |
| |
|
||||||| |
|
|
| T |
244192 |
ttcttcg |
244186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University