View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13947_high_9 (Length: 309)

Name: NF13947_high_9
Description: NF13947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13947_high_9
NF13947_high_9
[»] chr5 (2 HSPs)
chr5 (81-291)||(41222112-41222322)
chr5 (8-83)||(41222675-41222752)
[»] chr8 (1 HSPs)
chr8 (99-228)||(13375861-13375997)
[»] chr6 (3 HSPs)
chr6 (99-228)||(16985223-16985359)
chr6 (116-153)||(16795006-16795043)
chr6 (168-228)||(16779031-16779091)
[»] chr3 (3 HSPs)
chr3 (162-228)||(38942998-38943064)
chr3 (117-228)||(7055522-7055640)
chr3 (162-228)||(38941597-38941663)
[»] scaffold0133 (1 HSPs)
scaffold0133 (188-228)||(6375-6415)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 81 - 291
Target Start/End: Complemental strand, 41222322 - 41222112
Alignment:
Q  81 ttgctgggatcactacttcaacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagctagcgaccttatctttggaaactcac 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  41222322 ttgctgggatcactacttcaacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaatctagcgaccttatctttcgaaactcac 41222223  T
Q  181 tgatatgtaattcttgaagagaagtcatggcaccctaccagtccggcagcggcgggcatcagcagttatgtgactaaccataacatcatgcatgcatttt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41222222 tgatatgtaattcttgaagagaagtcatggcaccctaccagtccggcagcggcgggcatcagcagttatgtgactaaccataacatcatgcatgcatttt 41222123  T
Q  281 gacacaggggt 291  Q
    |||||| ||||    
T  41222122 gacacatgggt 41222112  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 41222752 - 41222675
Alignment:
Q  8 ccaagaatatttttataaagtgaccatatatttaagatatatat--cgtgtcacaataaatttacattacattaattg 83  Q
    |||| ||||||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  41222752 ccaaaaatatttttatgaagtgaccatatatttaagatatatatatcgtgttacaataaatttacattacattaattg 41222675  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 13375861 - 13375997
Alignment:
Q  99 caacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagc-------tagcgaccttatctttggaaactcactgatatgtaat 191  Q
    |||||||||| || |||||||||||||| |||||| ||||||||||||||||||||       ||| ||||||| ||| |||||| ||||||| | ||||    
T  13375861 caacatagagcaactaacaatacttaacctttgcaagtttcggagttgctgaaagctgtctggtagtgaccttaacttcggaaacccactgatttttaat 13375960  T
Q  192 tcttgaagagaagtcatggcaccctaccagtccggca 228  Q
      |||||||| ||||||||||||| ||||||| ||||    
T  13375961 ctttgaagagtagtcatggcacccaaccagtctggca 13375997  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 16985223 - 16985359
Alignment:
Q  99 caacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagct-------agcgaccttatctttggaaactcactgatatgtaat 191  Q
    |||||||| | ||| || |||| ||||||||||||  ||||||||||||||||||||       || || |||| ||||||||| ||| |||| | ||||    
T  16985223 caacatagggcaatcaataataattaacttttgcaaatttcggagttgctgaaagctgtctggtagtgaacttaactttggaaagtcaatgatgtataat 16985322  T
Q  192 tcttgaagagaagtcatggcaccctaccagtccggca 228  Q
    |||||||||||||||||||||||| | ||||| ||||    
T  16985323 tcttgaagagaagtcatggcacccaaacagtctggca 16985359  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 16795006 - 16795043
Alignment:
Q  116 caatacttaacttttgcatgtttcggagttgctgaaag 153  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  16795006 caatacttaactcttgcaagtttcggagttgctgaaag 16795043  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 16779031 - 16779091
Alignment:
Q  168 tttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca 228  Q
    ||||||||||||  ||| | |||| ||||||||||||||||||||||| | ||||| ||||    
T  16779031 tttggaaactcatagatgtctaatacttgaagagaagtcatggcacccaaacagtctggca 16779091  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 38942998 - 38943064
Alignment:
Q  162 cttatctttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca 228  Q
    |||| ||| |||||| ||||||| ||||||  |||||||||||||||||||||| ||||||||||||    
T  38942998 cttaacttcggaaacccactgatttgtaatctttgaagagaagtcatggcacccaaccagtccggca 38943064  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 7055640 - 7055522
Alignment:
Q  117 aatacttaacttttgcatgtttcggagttgctgaaagct-------agcgaccttatctttggaaactcactgatatgtaattcttgaagagaagtcatg 209  Q
    ||||||||||||||| | |||| |||||||||||| |||       |||||||||| | | ||||||  |  ||| |||||| |||||||||||||||||    
T  7055640 aatacttaacttttgtaagttttggagttgctgaatgctgtctggtagcgaccttaacatcggaaacctagagatttgtaatacttgaagagaagtcatg 7055541  T
Q  210 gcaccctaccagtccggca 228  Q
    |||||| ||||||||||||    
T  7055540 gcacccaaccagtccggca 7055522  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 38941663 - 38941597
Alignment:
Q  162 cttatctttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca 228  Q
    |||| ||||||||||| |  ||| |||||| ||||||||||||||||||||||| ||||||| ||||    
T  38941663 cttaactttggaaacttaaggatgtgtaatacttgaagagaagtcatggcacccaaccagtctggca 38941597  T

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Target: scaffold0133 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 6375 - 6415
Alignment:
Q  188 taattcttgaagagaagtcatggcaccctaccagtccggca 228  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  6375 taatacttgaagagaagtcatggcacccaaccagtccggca 6415  T

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