View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13947_low_14 (Length: 271)
Name: NF13947_low_14
Description: NF13947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13947_low_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 2 - 271
Target Start/End: Original strand, 7480204 - 7480474
Alignment:
| Q |
2 |
catcatcattagactaagaacaacaacataaatgagttggacaccacatttgtacctaaaaccttaaggcattagatttgtaggttttcttatttataaa |
101 |
Q |
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| T |
7480204 |
catcaacattagactaagaacaacaacataagtgagttggacaccacatctgtacctaaaaccttaaggcattagatttgtaggttttcttatttataaa |
7480303 |
T |
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| Q |
102 |
gt-ttcaacctccactttttcaagcattgttggactttcaacttacgcttgctccacaacccccttgaatttgtggtgaatatgcctttaaaactgnnnn |
200 |
Q |
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| T |
7480304 |
gtgttaaacctccactttttcaagcattgttggactttcaacttacacttgctacgcaacccccttgaatttgtggtgaatatgcctttaaaactgtttt |
7480403 |
T |
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| Q |
201 |
nnnnnccttcctatttctacatagggtgattcgaatcatcttattagttgtgttagtgtgattaaaaccgt |
271 |
Q |
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| T |
7480404 |
ttttttcttcctatttctacatagggtgattcgaatcagcttattagttgtgttagtgtgattaaaaccgt |
7480474 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 32567981 - 32568030
Alignment:
| Q |
38 |
ttggacaccacatttgtacctaaaaccttaaggcattagatttgtaggtt |
87 |
Q |
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| T |
32567981 |
ttggacaccacatcttaacctaaaaccttaaggcattaggtttgtgggtt |
32568030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 3624905 - 3624876
Alignment:
| Q |
19 |
gaacaacaacataaatgagttggacaccac |
48 |
Q |
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| T |
3624905 |
gaacaacaacataaatgagttggacaccac |
3624876 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 2323735 - 2323695
Alignment:
| Q |
34 |
tgagttggacaccacatttgtacctaaaaccttaaggcatt |
74 |
Q |
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| T |
2323735 |
tgagttggacaccacatcttaacctaaaaccttaaggcatt |
2323695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 25390306 - 25390374
Alignment:
| Q |
34 |
tgagttggacaccacatttgtacctaaaaccttaaggcattagatttgtaggttttcttatttataaag |
102 |
Q |
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| T |
25390306 |
tgagttggacaccacacttctacccaaaaccttaagacaataggtttatgggtcttcttagttataaag |
25390374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 8240625 - 8240677
Alignment:
| Q |
17 |
aagaacaacaacataaatgagttggacaccacatttgtacctaaaaccttaag |
69 |
Q |
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| T |
8240625 |
aagaacaaccacataaatgagttggataccacatcttaacctaataccttaag |
8240677 |
T |
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