View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13947_low_15 (Length: 237)
Name: NF13947_low_15
Description: NF13947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13947_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 49675518 - 49675298
Alignment:
| Q |
1 |
ttgttttcacatcacggtgaatgatttcagaagcatggagataagccaaagcagtagcagtctctaaggcaactttcattcgaatatgccatggaagaaa |
100 |
Q |
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| T |
49675518 |
ttgttttcacatcacggtgaatgatttcagaagcatggagataagccaaagcagtagcagtctctaaggcaactttcattcgaatatgccatggaagaaa |
49675419 |
T |
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| Q |
101 |
gccaggattcgttgattcacaacgcagatgactggaaacagttccatttgaaatgtattcatatacaagcaatagttcatgactatgatgtgaagtacag |
200 |
Q |
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| T |
49675418 |
gccaggattcgttgattcacaacgcagatgactggaaacagttccatttgaaatgtattcatatacaagcaatagttcatgactatgatgtgaagtacag |
49675319 |
T |
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| Q |
201 |
ccatagagagacactagattt |
221 |
Q |
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||||||||||| ||||||||| |
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| T |
49675318 |
ccatagagagaaactagattt |
49675298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 49667345 - 49667126
Alignment:
| Q |
3 |
gttttcacatcacggtgaatgatttcagaagcatggagataagccaaagcagtagcagtctctaaggcaactttcattcgaatatgccatggaagaaagc |
102 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||| ||| ||||| ||| |||||| || ||| |
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| T |
49667345 |
gttttcacgtcacggtgaatgatcccagaagcatggagataagccaaggcattagcagtctctatggcaattttaattcgtatagaccatggtagtaagt |
49667246 |
T |
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| Q |
103 |
caggattcgttgattcacaacgcagatgactggaaacagttccatttgaaatgtattcatatacaagcaatagttcatgactatgatgtgaagtacagcc |
202 |
Q |
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| T |
49667245 |
cgggcttggccaattcaccatggagatgacatgcaatggtaccatttgagatatattcatacacaagaagtagttcacgactgtgccgtgaagtgcatcc |
49667146 |
T |
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| Q |
203 |
atagagagacactagatttt |
222 |
Q |
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|||||| ||||| ||||||| |
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| T |
49667145 |
atagagggacacaagatttt |
49667126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 49692579 - 49692362
Alignment:
| Q |
3 |
gttttcacatcacggtgaatgatttcagaagcatggagataagccaaagcagtagcagtctctaaggcaactttcattcgaatatgccatggaagaaagc |
102 |
Q |
| |
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||||| ||||||||||||||||| || |||||||| ||||||||||| |||| ||| || |||| || | || |||||||||| |||||| || || | |
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| T |
49692579 |
gttttgacatcacggtgaatgatgtcggaagcatgtagataagccaatgcagaagcggtttctattgcgatttgcattcgaataagccatgtcagcaaac |
49692480 |
T |
|
| Q |
103 |
caggattcgttgattcacaacgcagatgactggaaacagttccatttgaaatgtattcatatacaagcaatagttcatgactatgatgtgaagtacagcc |
202 |
Q |
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| T |
49692479 |
cggctctagctaaatcaccatggagatggctagccacagttccatttggaacatattcatatacaagtagtagctcacggctgtgacgtgaagtgcagcc |
49692380 |
T |
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| Q |
203 |
atagagagacactagatt |
220 |
Q |
| |
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|||||| ||||||||||| |
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| T |
49692379 |
atagagggacactagatt |
49692362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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