View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13947_low_16 (Length: 235)
Name: NF13947_low_16
Description: NF13947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13947_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 55480953 - 55480715
Alignment:
| Q |
1 |
tctctctcgttccattacaattttgaataaatcatttgtgccaatgataagggccccttatacattgtgaaaaagggaattatttgtgccaattttcttc |
100 |
Q |
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| T |
55480953 |
tctctctcgttccattacaatttagaataaatcatttgtgtcaatgataagggccccttatacattatgaaaaagggaattatttgtgccaattatcttc |
55480854 |
T |
|
| Q |
101 |
cgatttcatttctgctcttcttccttcatttatgaa----------------attaagaacagctgcgttatttgtgccaattaacgtgaaatctgttta |
184 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
55480853 |
cgatttcatttctgctcttcttccttcatttatgaaaaaggggcccttatacattaagaacagctgggttatttgtgccaattcacgtgaaatctgttta |
55480754 |
T |
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| Q |
185 |
gcaagagaattatttgaacagctgggttatttctttatg |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
55480753 |
gcaagagaattatttgaacagctgggttatttctttatg |
55480715 |
T |
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