View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13947_low_17 (Length: 223)
Name: NF13947_low_17
Description: NF13947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13947_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 5905834 - 5905644
Alignment:
| Q |
18 |
attctcaacagaagggttggattcttataataaagggctaattgatgaagtgaaaaatattgcacatcagtgtttaacagagcagttttaagaaataccg |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5905834 |
attctcaacaaaagggttggattcttataataaagggctaattgatgaagtgaaaaatattgcacatcagtgtttaacagaacagttttaagaaataccg |
5905735 |
T |
|
| Q |
118 |
aaggagaaagtaaatacgatgggtggtcggaaacgtaagcaaatggatcatctgagtatatggagtatgaataacagaagactgtagaattat |
210 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5905734 |
aaggagaaagtaaataagaagggtagtcggaaacgtaagcaaaaggatcatcttag--tatggagtatgaatagcagaagactgtagaattat |
5905644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University