View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13947_low_4 (Length: 444)

Name: NF13947_low_4
Description: NF13947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13947_low_4
NF13947_low_4
[»] chr4 (11 HSPs)
chr4 (46-437)||(5734644-5735038)
chr4 (270-400)||(18708038-18708167)
chr4 (271-400)||(18669268-18669396)
chr4 (276-400)||(18715284-18715407)
chr4 (276-394)||(36801504-36801620)
chr4 (276-400)||(10394228-10394350)
chr4 (304-385)||(7777198-7777279)
chr4 (276-400)||(9045724-9045846)
chr4 (304-400)||(18735544-18735641)
chr4 (303-369)||(36002899-36002964)
chr4 (68-204)||(5729224-5729364)
[»] chr3 (7 HSPs)
chr3 (46-437)||(18658425-18658819)
chr3 (270-400)||(34661160-34661288)
chr3 (307-400)||(31174271-31174363)
chr3 (269-360)||(10427164-10427253)
chr3 (68-204)||(18652994-18653134)
chr3 (302-359)||(7249394-7249451)
chr3 (401-433)||(32969231-32969263)
[»] chr5 (7 HSPs)
chr5 (270-397)||(41817810-41817935)
chr5 (271-400)||(28662539-28662666)
chr5 (260-400)||(19576794-19576932)
chr5 (270-386)||(20070816-20070930)
chr5 (276-400)||(37042179-37042301)
chr5 (295-400)||(43361007-43361112)
chr5 (264-400)||(22578552-22578684)
[»] scaffold0003 (1 HSPs)
scaffold0003 (270-400)||(303390-303518)
[»] chr7 (12 HSPs)
chr7 (264-400)||(20389031-20389165)
chr7 (276-400)||(16649224-16649346)
chr7 (276-400)||(17623585-17623707)
chr7 (270-397)||(6961455-6961577)
chr7 (271-400)||(28755160-28755282)
chr7 (322-400)||(30781365-30781443)
chr7 (259-365)||(4248485-4248589)
chr7 (306-400)||(22493705-22493799)
chr7 (256-400)||(24779284-24779433)
chr7 (270-372)||(25174609-25174709)
chr7 (270-350)||(29501769-29501847)
chr7 (399-433)||(39135092-39135126)
[»] chr6 (6 HSPs)
chr6 (271-400)||(31968670-31968796)
chr6 (269-398)||(1397782-1397909)
chr6 (260-385)||(13404975-13405098)
chr6 (302-403)||(7536862-7536961)
chr6 (301-382)||(7524288-7524371)
chr6 (302-361)||(2064534-2064593)
[»] chr2 (6 HSPs)
chr2 (270-384)||(31643211-31643323)
chr2 (276-400)||(29141558-29141680)
chr2 (307-400)||(29035110-29035203)
chr2 (295-361)||(17525701-17525767)
chr2 (276-319)||(29034923-29034964)
chr2 (401-433)||(30857937-30857969)
[»] chr1 (6 HSPs)
chr1 (319-398)||(21852357-21852436)
chr1 (302-400)||(9246553-9246651)
chr1 (271-400)||(45040264-45040393)
chr1 (278-400)||(25030616-25030736)
chr1 (270-400)||(32540204-32540332)
chr1 (290-385)||(12882475-12882572)
[»] chr8 (9 HSPs)
chr8 (270-400)||(11636152-11636280)
chr8 (314-400)||(36109178-36109264)
chr8 (290-400)||(8995375-8995485)
chr8 (256-400)||(17836840-17836983)
chr8 (281-359)||(32017619-32017695)
chr8 (290-379)||(25382494-25382585)
chr8 (302-370)||(33180178-33180246)
chr8 (256-328)||(6599753-6599823)
chr8 (256-328)||(6675206-6675276)
[»] scaffold0028 (1 HSPs)
scaffold0028 (302-360)||(33454-33512)


Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 46 - 437
Target Start/End: Complemental strand, 5735038 - 5734644
Alignment:
Q  46 caatgagcttgttccggaccatatatatatgtccttgtttaaattgcaaacgtatcatattttagaaatcttcaaagtggtctcgcaccggataaactat 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5735038 caatgagcttgttccggaccatatatatatgtccttgtttaaattgcaaacgtatcatattttagaaatcttcaaagtggtctcgcaccagataaactat 5734939  T
Q  146 tattcaataaaactgttaaggaaagagttattgccatcaagttgaagaaatccctacttgtgaggcgagtgagatctaaagtcagtggcagaattagaag 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5734938 tattcaataaaactgttaaggaaagagttattgccatcaagttgaagaaatccctacttgtgaggcgagtgagatctaaagtcagtggcagaattagaag 5734839  T
Q  246 ---gnnnnnnnntaaaattcgggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatg 342  Q
                 |||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5734838 aaaaaaaaaaaaaaaaactcggatgaaccactaaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatg 5734739  T
Q  343 acggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaactaatactacccccgtccctaattacaagaccctttgcta 437  Q
    |||||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5734738 acggagtttgactaaaaagttagggtgtatacttaaaaaatgaccaatttaacaactaatactacccccgtccctaattataagaccctttgcta 5734644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 270 - 400
Target Start/End: Complemental strand, 18708167 - 18708038
Alignment:
Q  270 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacg-aagttgaaatgacggagtttgactaaaaaattagggt 368  Q
    ||||| ||||||||||||||||||  ||||| |||||||||||||||| |  |||||||||| ||||||||||||||||||||||||||||| |||||||    
T  18708167 ccactaaaattaattataatatat--aaacacaaattaaagttgtaatcaacattaagtacgcaagttgaaatgacggagtttgactaaaaagttagggt 18708070  T
Q  369 ggatatttaaaaaattacgaatttaacaacta 400  Q
    ||||||||||| ||||||| ||||||||||||    
T  18708069 ggatatttaaataattacgtatttaacaacta 18708038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 271 - 400
Target Start/End: Complemental strand, 18669396 - 18669268
Alignment:
Q  271 cactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacg-aagttgaaatgacggagtttgactaaaaaattagggtg 369  Q
    |||| ||||||||||||||||||  ||||| |||||||||||||||| |  |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  18669396 cactaaaattaattataatatat--aaacacaaattaaagttgtaatcaacattaagtacgcaagttgaaatgacggagtttgactaaaaagttagggtg 18669299  T
Q  370 gatatttaaaaaattacgaatttaacaacta 400  Q
    |||| ||||| ||||||| ||||||||||||    
T  18669298 gatacttaaataattacgtatttaacaacta 18669268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 276 - 400
Target Start/End: Complemental strand, 18715407 - 18715284
Alignment:
Q  276 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacga-agttgaaatgacggagtttgactaaaaaattagggtggatat 374  Q
    ||||||||||||||||||  ||||| |||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||| ||||||||||||     
T  18715407 aaattaattataatatat--aaacacaaattaaagttgtaatcaacattaagtacgcgagttgaaatgacggagtttgactaaaaagttagggtggatac 18715310  T
Q  375 ttaaaaaattacgaatttaacaacta 400  Q
    ||||| ||||||| ||||||||||||    
T  18715309 ttaaataattacgtatttaacaacta 18715284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 276 - 394
Target Start/End: Original strand, 36801504 - 36801620
Alignment:
Q  276 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatt 375  Q
    ||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||| || | |||||||||| ||||| ||| |||||||| |    
T  36801504 aaattaattataatatat--aaacataaattaaagttgtaataaacattaagtacgaagttgagataaaggagtttgaccaaaaacttacggtggatact 36801601  T
Q  376 taaaaaattacgaatttaa 394  Q
    |||| |||||| |||||||    
T  36801602 taaataattacaaatttaa 36801620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 276 - 400
Target Start/End: Complemental strand, 10394350 - 10394228
Alignment:
Q  276 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatt 375  Q
    ||||||||||||||||||   |||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||   ||||| | |||| |    
T  10394350 aaattaattataatatatt--aacacaaattaatgttgtaataagcattaagtacgaagttgaaatgaaggagtttgactaaattgttaggatagatact 10394253  T
Q  376 taaaaaattacgaatttaacaacta 400  Q
    |||| ||||||  ||||||| ||||    
T  10394252 taaataattacatatttaactacta 10394228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 7777279 - 7777198
Alignment:
Q  304 attaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaatta 385  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| || ||| ||||| |||||    
T  7777279 attaaaattgtaataagcattaagtacgaagttgaaatgacggagtttgactaaacagttaggatgtatacttaaataatta 7777198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 400
Target Start/End: Original strand, 9045724 - 9045846
Alignment:
Q  276 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatt 375  Q
    |||| |||||||||||||  ||||| ||||||||||||||||||  |||||| | |||||||||||| ||  |||||||||||||  ||||||||||| |    
T  9045724 aaataaattataatatat--aaacacaaattaaagttgtaataaacattaagcaagaagttgaaatggcgatgtttgactaaaaagctagggtggatagt 9045821  T
Q  376 taaaaaattacgaatttaacaacta 400  Q
    |||| || |||  |||| |||||||    
T  9045822 taaataactacatattttacaacta 9045846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 400
Target Start/End: Complemental strand, 18735641 - 18735544
Alignment:
Q  304 attaaagttgtaataagtattaagtacg-aagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 400  Q
    |||||||||||||| |  |||||||||  ||||||||||||| ||||||||||||||| | |||||||||| ||||| ||||||  ||||||||||||    
T  18735641 attaaagttgtaatcaacattaagtacttaagttgaaatgacagagtttgactaaaaagtaagggtggatacttaaataattacatatttaacaacta 18735544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 36002964 - 36002899
Alignment:
Q  303 aattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 369  Q
    |||||||||||||||||||||||   || | |||||||||||| |||||||||| ||||||||||||    
T  36002964 aattaaagttgtaataagtattagacacaatgttgaaatgacgaagtttgacta-aaaattagggtg 36002899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 5729364 - 5729224
Alignment:
Q  68 atatatatgtccttgtttaaattgcaaacgtatcatattttagaaatcttcaaag---tggtctcgcaccggataaac-tattattcaataaaactgtta 163  Q
    ||||||| | |||||||||||  ||||||  || |||||| ||||||||||||||   |||||||||||  ||| ||| || | ||||||||||  ||||    
T  5729364 atatatacgcccttgtttaaacagcaaaccaatgatatttcagaaatcttcaaagtcttggtctcgcactagatgaacttaatcttcaataaaatcgtta 5729265  T
Q  164 aggaaagagttattgccatcaagttgaagaaatccctactt 204  Q
    |||||  ||||||||  || ||||| |||||| ||||||||    
T  5729264 aggaagaagttattgatataaagttcaagaaaaccctactt 5729224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 46 - 437
Target Start/End: Complemental strand, 18658819 - 18658425
Alignment:
Q  46 caatgagcttgttccggaccatatatatatgtccttgtttaaattgcaaacgtatcatattttagaaatcttcaaagtggtctcgcaccggataaactat 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18658819 caatgagcttgttccggaccatatatatatgtccttgtttaaattgcaaacgtatcatattttagaaatcttcaaagtggtctcgcaccagataaactat 18658720  T
Q  146 tattcaataaaactgttaaggaaagagttattgccatcaagttgaagaaatccctacttgtgaggcgagtgagatctaaagtcagtggcagaattagaag 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18658719 tattcaataaaactgttaaggaaagagttattgccatcaagttgaagaaatccctacttgtgaggcgagtgagatctaaagtcagtggcagaattagaag 18658620  T
Q  246 ---gnnnnnnnntaaaattcgggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatg 342  Q
                 |||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18658619 aaaaaaaaaaaaaaaaactcggatgaaccactaaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatg 18658520  T
Q  343 acggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaactaatactacccccgtccctaattacaagaccctttgcta 437  Q
    |||||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18658519 acggagtttgactaaaaagttagggtgtatacttaaaaaatgaccaatttaacaactaatactacccccgtccctaattataagaccctttgcta 18658425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 270 - 400
Target Start/End: Complemental strand, 34661288 - 34661160
Alignment:
Q  270 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 369  Q
    ||||| ||||||||||||||||||  ||| | ||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||| ||  ||||    
T  34661288 ccactaaaattaattataatatat--aaatacaaattaaagttgtaataaacattaagtacgaagttgaaatgacagagtttgactaaaaagtttaggtg 34661191  T
Q  370 gatatttaaaaaattacgaatttaacaacta 400  Q
    |||| ||||| ||||||  ||||||||||||    
T  34661190 gatacttaaataattacatatttaacaacta 34661160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 31174271 - 31174363
Alignment:
Q  307 aaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 400  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||| ||||||||||||    
T  31174271 aaagttgtaataagtattaagaacgaagttgaaatgacggagtttgactaaaaagttaaggtgaatatttataaagttacg-atttaacaacta 31174363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 269 - 360
Target Start/End: Original strand, 10427164 - 10427253
Alignment:
Q  269 accactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaa 360  Q
    |||||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||    
T  10427164 accactaaaattaattataatatat--aaacacaaattaaagttgtaataagtattaattacgaagttgaaatgacatagtttgactaaaaa 10427253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 18653134 - 18652994
Alignment:
Q  68 atatatatgtccttgtttaaattgcaaacgtatcatattttagaaatcttcaaag---tggtctcgcaccggataaac-tattattcaataaaactgtta 163  Q
    ||||||| | |||||||||||  ||||||  || |||||| ||||||||||||||   |||||||||||  ||| ||| || | ||||||||||  ||||    
T  18653134 atatatacgcccttgtttaaacagcaaaccaatgatatttcagaaatcttcaaagtcttggtctcgcactagatgaacttaatcttcaataaaatcgtta 18653035  T
Q  164 aggaaagagttattgccatcaagttgaagaaatccctactt 204  Q
    |||||  ||||||||  || ||||| |||||| ||||||||    
T  18653034 aggaagaagttattgatataaagttcaagaaaaccctactt 18652994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 359
Target Start/End: Complemental strand, 7249451 - 7249394
Alignment:
Q  302 aaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaa 359  Q
    |||||||||||||||||| |||||||   ||||||||| ||| | |||||||||||||    
T  7249451 aaattaaagttgtaataaatattaagcgtgaagttgaagtgatgaagtttgactaaaa 7249394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 433
Target Start/End: Complemental strand, 32969263 - 32969231
Alignment:
Q  401 atactacccccgtccctaattacaagacccttt 433  Q
    |||||||||||||||||||||| ||||||||||    
T  32969263 atactacccccgtccctaattataagacccttt 32969231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 270 - 397
Target Start/End: Complemental strand, 41817935 - 41817810
Alignment:
Q  270 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 369  Q
    ||||| ||||||||||||||||||  ||||| |||||||| |||||||||  |||||||| |||||||||||||||||||||||||||||  |||||||     
T  41817935 ccactaaaattaattataatatat--aaacacaaattaaaattgtaataaacattaagtatgaagttgaaatgacggagtttgactaaaatgttagggta 41817838  T
Q  370 gatatttaaaaaattacgaatttaacaa 397  Q
    |||||||| ||||||||| |||||||||    
T  41817837 gatatttataaaattacgtatttaacaa 41817810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 271 - 400
Target Start/End: Complemental strand, 28662666 - 28662539
Alignment:
Q  271 cactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtgg 370  Q
    |||| ||||||||||||||||||  || |||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||| ||| ||||     
T  28662666 cactaaaattaattataatatat--aagcataaattaaagttgtaataagcattaaatacggagttgaaatgacggagtttgattaaaaagttatggtga 28662569  T
Q  371 atatttaaaaaattacgaatttaacaacta 400  Q
    ||| ||||| ||||||  ||||||||||||    
T  28662568 atacttaaataattacatatttaacaacta 28662539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 260 - 400
Target Start/End: Original strand, 19576794 - 19576932
Alignment:
Q  260 ttcgggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaa 359  Q
    ||||||||  ||||| ||||||||||||||||||  ||||| ||||||||||||||||| | || |||||||||||||||||||| || |||||||||||    
T  19576794 ttcgggtgggccactaaaattaattataatatat--aaacacaaattaaagttgtaatacgcataaagtacgaagttgaaatgacagaatttgactaaaa 19576891  T
Q  360 aattagggtggatatttaaaaaattacgaatttaacaacta 400  Q
    | || ||||| ||| ||||| ||||||  ||||||||||||    
T  19576892 agtttgggtgaatacttaaataattacatatttaacaacta 19576932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 386
Target Start/End: Original strand, 20070816 - 20070930
Alignment:
Q  270 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 369  Q
    ||||| |||| |||||||||||||  ||| |||||||||||||||||||||||||||  || |||||||||| | |||||||||||||||| ||||||||    
T  20070816 ccactaaaataaattataatatat--aaagataaattaaagttgtaataagtattaaacacaaagttgaaataatggagtttgactaaaaagttagggtg 20070913  T
Q  370 gatatttaaaaaattac 386  Q
    |||| ||||| ||||||    
T  20070914 gatacttaaataattac 20070930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 400
Target Start/End: Original strand, 37042179 - 37042301
Alignment:
Q  276 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatt 375  Q
    ||||||||||||||||||  | ||| ||||| ||||||||||||| ||| | |||||||||||||| ||  |||||||||||||| ||||| |||||  |    
T  37042179 aaattaattataatatat--agacacaaatttaagttgtaataagcatttaatacgaagttgaaataacaaagtttgactaaaaagttaggatggatgct 37042276  T
Q  376 taaaaaattacgaatttaacaacta 400  Q
    |||| | ||||  ||||||||||||    
T  37042277 taaatagttacatatttaacaacta 37042301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 400
Target Start/End: Original strand, 43361007 - 43361112
Alignment:
Q  295 taaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaa 394  Q
    |||||| ||||||||||||||||||| || |||||| ||||| ||||| | ||||||| ||| ||| |||||||| ||| ||||| ||||||  ||||||    
T  43361007 taaacacaaattaaagttgtaataagcatcaagtaccaagttaaaatgtcagagtttggctataaagttagggtgtatacttaaataattacatatttaa 43361106  T
Q  395 caacta 400  Q
    ||||||    
T  43361107 caacta 43361112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 264 - 400
Target Start/End: Original strand, 22578552 - 22578684
Alignment:
Q  264 ggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaatt 363  Q
    |||| |||||| |||| |||||||||||||    | |||||||||| | |||||||| || ||  | ||||||||||||||||||||||||||||||  |    
T  22578552 ggtggaccactaaaataaattataatatat----aaataaattaaaatcgtaataaggatcaaacatgaagttgaaatgacggagtttgactaaaaaggt 22578647  T
Q  364 agggtggatatttaaaaaattacgaatttaacaacta 400  Q
    || ||| ||||||||| ||||||  |||| |||||||    
T  22578648 agagtgaatatttaaataattacatattttacaacta 22578684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 270 - 400
Target Start/End: Original strand, 303390 - 303518
Alignment:
Q  270 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 369  Q
    ||||| |||| |||||||||||||  ||| |||||||||||||||||||||||||||  || |||||||||||| |||||||||||||||| ||||||||    
T  303390 ccactaaaataaattataatatat--aaagataaattaaagttgtaataagtattaaacacaaagttgaaatgatggagtttgactaaaaagttagggtg 303487  T
Q  370 gatatttaaaaaattacgaatttaacaacta 400  Q
    |||| ||||| ||||||  |||| |||||||    
T  303488 gatacttaaataattacatattttacaacta 303518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 264 - 400
Target Start/End: Original strand, 20389031 - 20389165
Alignment:
Q  264 ggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaatt 363  Q
    |||| |||||| |||| |||||||||||||  ||| ||||||||||||||||||||||||||| ||| |||||||||| | || ||||||||||||| ||    
T  20389031 ggtggaccactaaaataaattataatatat--aaagataaattaaagttgtaataagtattaaatacaaagttgaaattatggggtttgactaaaaagtt 20389128  T
Q  364 agggtggatatttaaaaaattacgaatttaacaacta 400  Q
    |||||||||| ||||| ||||||  |||| |||||||    
T  20389129 agggtggatacttaaataattacatattttacaacta 20389165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 400
Target Start/End: Original strand, 16649224 - 16649346
Alignment:
Q  276 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatt 375  Q
    ||||||||||||||||||  ||||| ||||||||||||||||||  |||||||||||||||||||| || |||||| |||||||| |||||||||||| |    
T  16649224 aaattaattataatatat--aaacacaaattaaagttgtaataaacattaagtacgaagttgaaataaccgagttttactaaaaagttagggtggatact 16649321  T
Q  376 taaaaaattacgaatttaacaacta 400  Q
    |||| |||  |  ||||||||||||    
T  16649322 taaataatagcatatttaacaacta 16649346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 400
Target Start/End: Original strand, 17623585 - 17623707
Alignment:
Q  276 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatt 375  Q
    ||||||||||||||||||  ||||| ||||||||||||||||||  |||||||||||||||||||| || |||||| |||||||| |||||||||||| |    
T  17623585 aaattaattataatatat--aaacacaaattaaagttgtaataaacattaagtacgaagttgaaataaccgagttttactaaaaagttagggtggatact 17623682  T
Q  376 taaaaaattacgaatttaacaacta 400  Q
    |||| |||  |  ||||||||||||    
T  17623683 taaataatagcatatttaacaacta 17623707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 270 - 397
Target Start/End: Complemental strand, 6961577 - 6961455
Alignment:
Q  270 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 369  Q
    ||||| ||||||||||||||||||  ||||| ||||||||||||||||||| |   ||||| ||||||||||| ||||||||||||||||| ||||||||    
T  6961577 ccactaaaattaattataatatat--aaacacaaattaaagttgtaataagca---agtacaaagttgaaatggcggagtttgactaaaaagttagggtg 6961483  T
Q  370 gatatttaaaaaattacgaatttaacaa 397  Q
     ||| ||||| ||||||  |||||||||    
T  6961482 aatacttaaataattacatatttaacaa 6961455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 400
Target Start/End: Complemental strand, 28755282 - 28755160
Alignment:
Q  271 cactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtgg 370  Q
    |||| ||||||||||||||||||   || | ||||||||||||||||||||||||||||| |||||||||||| ||||||||    |||  ||||| |||    
T  28755282 cactaaaattaattataatatat---aatacaaattaaagttgtaataagtattaagtacaaagttgaaatgatggagtttg----aaatgttaggctgg 28755190  T
Q  371 atatttaaaaaattacgaatttaacaacta 400  Q
    ||| ||||| ||||||| ||||||||||||    
T  28755189 atacttaaataattacgtatttaacaacta 28755160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 400
Target Start/End: Complemental strand, 30781443 - 30781365
Alignment:
Q  322 attaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 400  Q
    ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||| ||||||  ||||||||||||    
T  30781443 attaagtacaaagttgaaatgacgaagtttgactaaaaaattaaggtggatatttaaacaattacatatttaacaacta 30781365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 365
Target Start/End: Original strand, 4248485 - 4248589
Alignment:
Q  259 attcgggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaa 358  Q
    ||||||||| ||||||||||  |||||||||||||  ||| | ||||||||||| ||||||| |||||  ||||||||||||||||| ||||||||||||    
T  4248485 attcgggtggaccactgaaacaaattataatatat--aaatacaaattaaagttataataagcattaaacacgaagttgaaatgacgaagtttgactaaa 4248582  T
Q  359 aaattag 365  Q
    || ||||    
T  4248583 aagttag 4248589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 22493705 - 22493799
Alignment:
Q  306 taaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 400  Q
    ||||||||||||||  |||||||||| ||||||| ||||| |||||||||||||| ||||||| |||| ||||| ||||||  ||||||||||||    
T  22493705 taaagttgtaataaacattaagtacgtagttgaattgacgaagtttgactaaaaagttagggttgatacttaaataattacatatttaacaacta 22493799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 400
Target Start/End: Original strand, 24779284 - 24779433
Alignment:
Q  256 aaaattcgggtgaaccactgaaattaattataat-----atatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtt 350  Q
    ||||||||||||  ||||| ||||||||||||||     |||| || | | |||||||| ||||| |||| ||||| || ||||||||||||||||||||    
T  24779284 aaaattcgggtgggccactaaaattaattataatttataatatatagatacaaattaaatttgtattaagcattaaatatgaagttgaaatgacggagtt 24779383  T
Q  351 tgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 400  Q
    || ||||||| |||   |||||| ||| ||||||||| ||||||||||||    
T  24779384 tggctaaaaagttataatggatacttataaaattacgtatttaacaacta 24779433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 270 - 372
Target Start/End: Complemental strand, 25174709 - 25174609
Alignment:
Q  270 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 369  Q
    ||||| |||| |||||||||||||  ||||||||| |||||| |||||||   || |  | |||||||||||||||||||||||||||||| ||||||||    
T  25174709 ccactaaaataaattataatatat--aaacataaaataaagtagtaataaacgttcaccatgaagttgaaatgacggagtttgactaaaaagttagggtg 25174612  T
Q  370 gat 372  Q
    |||    
T  25174611 gat 25174609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 29501769 - 29501847
Alignment:
Q  270 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtt 350  Q
    ||||| |||||||||| |||||||  ||||| |||||||||||||||| |  |||||||||||||| |||||||| |||||    
T  29501769 ccactaaaattaattacaatatat--aaacacaaattaaagttgtaattaacattaagtacgaagtcgaaatgacagagtt 29501847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 433
Target Start/End: Original strand, 39135092 - 39135126
Alignment:
Q  399 taatactacccccgtccctaattacaagacccttt 433  Q
    |||||||||| ||||||||||||||||||||||||    
T  39135092 taatactacctccgtccctaattacaagacccttt 39135126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 271 - 400
Target Start/End: Original strand, 31968670 - 31968796
Alignment:
Q  271 cactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagt-acgaagttgaaatgacggagtttgactaaaaaattagggtg 369  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||||  ||||||| | |||||| ||||||  |||| |||||||||||||||||||    
T  31968670 cactaaaattaattataatatat--aaacataaattaaagttgtaataaacattaagtcatgaagttaaaatga--gagtctgactaaaaaattagggtg 31968765  T
Q  370 gatatttaaaaaattacgaatttaacaacta 400  Q
    |||| ||| ||||||||| ||||||||||||    
T  31968766 gatacttataaaattacgtatttaacaacta 31968796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 269 - 398
Target Start/End: Original strand, 1397782 - 1397909
Alignment:
Q  269 accactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggt 368  Q
    |||||| ||||||||||||||||||  ||||| |||||||| || |||||||||||| || ||||||||||||||| || ||| | |||||| ||||| |    
T  1397782 accactaaaattaattataatatat--aaacacaaattaaaattataataagtattatgtgcgaagttgaaatgacagaatttaattaaaaagttaggat 1397879  T
Q  369 ggatatttaaaaaattacgaatttaacaac 398  Q
    | ||| ||| ||||||||  ||||||||||    
T  1397880 gaatacttataaaattacttatttaacaac 1397909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 385
Target Start/End: Original strand, 13404975 - 13405098
Alignment:
Q  260 ttcgggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaa 359  Q
    ||||||||| ||| | |||| ||||||||| |||  ||||| ||||||||    ||||||| |||||  |||||||||||||||| ||||||||||||||    
T  13404975 ttcgggtgagccattaaaataaattataatttat--aaacacaaattaaaaacataataagcattaaacacgaagttgaaatgactgagtttgactaaaa 13405072  T
Q  360 aattagggtggatatttaaaaaatta 385  Q
    || |||| |||||| ||||| |||||    
T  13405073 aactaggatggatacttaaataatta 13405098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 403
Target Start/End: Complemental strand, 7536961 - 7536862
Alignment:
Q  302 aaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaactaa 401  Q
    ||||||||||||||| ||  ||||||| ||||||||||||||  ||||||||||||||| | ||  |||||| ||||| |||| |  |||||||||||||    
T  7536961 aaattaaagttgtaacaaacattaagtgcgaagttgaaatga--gagtttgactaaaaagtaagtctggatacttaaataattgcatatttaacaactaa 7536864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 382
Target Start/End: Complemental strand, 7524371 - 7524288
Alignment:
Q  301 taaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaa-aaaattagggtggata-tttaaaaaa 382  Q
    |||||||||||||||||||  |||| | ||||||||||||||  ||||||| ||||| |||| ||||||||||| |||||||||    
T  7524371 taaattaaagttgtaataatcattatgcacgaagttgaaatggtggagttttactaagaaaactagggtggatactttaaaaaa 7524288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 2064534 - 2064593
Alignment:
Q  302 aaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaa 361  Q
    ||||||||||| ||||||| |||||  ||| | |||||||| ||||||||||||||||||    
T  2064534 aaattaaagttataataagcattaaacacggatttgaaatggcggagtttgactaaaaaa 2064593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 270 - 384
Target Start/End: Original strand, 31643211 - 31643323
Alignment:
Q  270 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 369  Q
    ||||| ||||||||||||||||||  ||||| ||||||||||||||||||| ||||| |||||||||||| |||||||||| |||| |||||||||| ||    
T  31643211 ccactaaaattaattataatatat--aaacacaaattaaagttgtaataagcattaaatacgaagttgaactgacggagttcgactgaaaaattaggatg 31643308  T
Q  370 gatatttaaaaaatt 384  Q
    |||| ||||| ||||    
T  31643309 gatacttaaataatt 31643323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 400
Target Start/End: Original strand, 29141558 - 29141680
Alignment:
Q  276 aaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatt 375  Q
    |||| |||||||||||||  ||||| |||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||||||  |||||||||||||    
T  29141558 aaataaattataatatat--aaacacaaattaaagtcgtaataaacattaagcacgaagttgaaatgatggagtttgactaaaaagatagggtggatatt 29141655  T
Q  376 taaaaaattacgaatttaacaacta 400  Q
    |||| ||||||  |||| |||||||    
T  29141656 taaataattacatatttgacaacta 29141680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 307 - 400
Target Start/End: Original strand, 29035110 - 29035203
Alignment:
Q  307 aaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 400  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||| ||| ||| |||| ||| ||| ||||||||| ||||||||||||    
T  29035110 aaagttgtaataaacattaagtacgaagttgaaatgacggagtttgactacaaagttaaggtgaatacttataaaattacgtatttaacaacta 29035203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 295 - 361
Target Start/End: Original strand, 17525701 - 17525767
Alignment:
Q  295 taaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaa 361  Q
    |||||| ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  17525701 taaacacaaattaaagttgtaataagcattaagcacgaagttgaaatgacggtgtttgactaaaaaa 17525767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 319
Target Start/End: Original strand, 29034923 - 29034964
Alignment:
Q  276 aaattaattataatatatgtaaacataaattaaagttgtaataa 319  Q
    ||||||||||||||||||  ||||| ||||||||||||||||||    
T  29034923 aaattaattataatatat--aaacacaaattaaagttgtaataa 29034964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 433
Target Start/End: Original strand, 30857937 - 30857969
Alignment:
Q  401 atactacccccgtccctaattacaagacccttt 433  Q
    |||||||||||||||||||||| ||||||||||    
T  30857937 atactacccccgtccctaattataagacccttt 30857969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 21852436 - 21852357
Alignment:
Q  319 agtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaac 398  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| ||||||| ||||||||||    
T  21852436 agtattaagtacgaagttgaaatgacggagtttaactaaaaagttagggtggatacttaaataattacgtatttaacaac 21852357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 302 - 400
Target Start/End: Original strand, 9246553 - 9246651
Alignment:
Q  302 aaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 400  Q
    |||||||| | |||||||| ||||||||||||||||||||||  |||||||| |||||| |||||||||||||||||| ||||||  ||||||||||||    
T  9246553 aaattaaaatggtaataagcattaagtacgaagttgaaatgatagagtttgattaaaaatttagggtggatatttaaataattacatatttaacaacta 9246651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 271 - 400
Target Start/End: Original strand, 45040264 - 45040393
Alignment:
Q  271 cactgaaattaattataatatatgtaaacataaattaaagttgtaataagta--ttaagtacgaagttgaaatgacggagtttgactaaaaaattagggt 368  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||||  |  ||||||| ||||||||||||||| |||||||||||||  |||||      
T  45040264 cactaaaattaattataatatat--aaacataaattaaagttgtaataaaaacattaagtaagaagttgaaatgacgaagtttgactaaaaggttaggac 45040361  T
Q  369 ggatatttaaaaaattacgaatttaacaacta 400  Q
    ||||| ||||| |||||   ||||||||||||    
T  45040362 ggatacttaaataattatatatttaacaacta 45040393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 400
Target Start/End: Complemental strand, 25030736 - 25030616
Alignment:
Q  278 attaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatattta 377  Q
    ||||||||||||||||  ||||| ||||||| ||||||||||| |||||  | ||| ||||| |||||||||||||||||||| ||| |||||||| |||    
T  25030736 attaattataatatat--aaacacaaattaaggttgtaataagcattaaagatgaaattgaattgacggagtttgactaaaaagttaaggtggatactta 25030639  T
Q  378 aaaaattacgaatttaacaacta 400  Q
    || ||||||   |||||||||||    
T  25030638 aataattacatctttaacaacta 25030616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 400
Target Start/End: Original strand, 32540204 - 32540332
Alignment:
Q  270 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 369  Q
    ||||| |||| |||||||||||||  ||||| |||||||||| |||||||| |||||  |||||||||||| || ||||||||||||||||  |||| ||    
T  32540204 ccactaaaataaattataatatat--aaacacaaattaaagtcgtaataagcattaaacacgaagttgaaacgatggagtttgactaaaaagctaggatg 32540301  T
Q  370 gatatttaaaaaattacgaatttaacaacta 400  Q
     ||||||||| ||||||  |||| |||||||    
T  32540302 aatatttaaataattacatattttacaacta 32540332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 385
Target Start/End: Original strand, 12882475 - 12882572
Alignment:
Q  290 atatgtaaacataaa-ttaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggat-atttaaaaaatta 385  Q
    ||||||||||||||| ||||||| |||||||| |||||| | |||||||||||  |  | |||||||||||| || |||| |||  ||||||||||||    
T  12882475 atatgtaaacataaaattaaagtagtaataagcattaagcatgaagttgaaattgcaaaatttgactaaaaagttcgggttgatgctttaaaaaatta 12882572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 270 - 400
Target Start/End: Complemental strand, 11636280 - 11636152
Alignment:
Q  270 ccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtg 369  Q
    ||||| ||||||||||||||||||  ||||| |||||||||||||| |||| ||||  |||||| ||||||||||| ||||| |||||||| ||||| ||    
T  11636280 ccactaaaattaattataatatat--aaacacaaattaaagttgtagtaagcattatatacgaatttgaaatgacgaagtttaactaaaaagttaggttg 11636183  T
Q  370 gatatttaaaaaattacgaatttaacaacta 400  Q
     ||| ||||| ||||||  ||||||||||||    
T  11636182 tatacttaaataattacatatttaacaacta 11636152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 314 - 400
Target Start/End: Complemental strand, 36109264 - 36109178
Alignment:
Q  314 taataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaatttaacaacta 400  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||  ||||||||||||    
T  36109264 taataagcattaattacgaagttgaaatgatggagtttgactaaaaagttagggtggatacttaaataattacatatttaacaacta 36109178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 8995485 - 8995375
Alignment:
Q  290 atatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtggatatttaaaaaattacgaa 389  Q
    |||| |||||| ||||||||||||||||||  |||||  ||||||||||||||| |||||||||||||||| ||| ||| |||| ||||| ||||||  |    
T  8995485 atatttaaacacaaattaaagttgtaataaacattaaacacgaagttgaaatgatggagtttgactaaaaacttatggttgatacttaaataattacata 8995386  T
Q  390 tttaacaacta 400  Q
    ||| |||||||    
T  8995385 ttttacaacta 8995375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 400
Target Start/End: Complemental strand, 17836983 - 17836840
Alignment:
Q  256 aaaattcgggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgact 355  Q
    |||||||||  | |||||| ||||||||||||||||||  ||| | |||||||| || ||||||| ||||| |||||||||||||| |||||||||| |     
T  17836983 aaaattcggacggaccactaaaattaattataatatat--aaatacaaattaaaattataataagcattaattacgaagttgaaataacggagtttggca 17836886  T
Q  356 aaaa-aattagggtggatatttaaaaaattacgaatttaacaacta 400  Q
    |||| | |||| ||||||| ||||| ||||||  ||||||| ||||    
T  17836885 aaaacagttagagtggatacttaaataattacatatttaacgacta 17836840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 281 - 359
Target Start/End: Original strand, 32017619 - 32017695
Alignment:
Q  281 aattataatatatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaa 359  Q
    |||||||||||||  ||| | |||||||| |||||||||| |||||||||  |||||||||||||||||||||||||||    
T  32017619 aattataatatat--aaatacaaattaaaattgtaataagcattaagtacagagttgaaatgacggagtttgactaaaa 32017695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 379
Target Start/End: Original strand, 25382494 - 25382585
Alignment:
Q  290 atatgtaaacataaattaaagttgtaataagtattaagtacgaagttgaaatg--acggagtttgactaaaaaattagggtggatatttaaa 379  Q
    |||| |||| ||||||||||||||||||||  || ||||||||||||||||||  | |||||||||| ||||  |||||||| ||| |||||    
T  25382494 atatataaatataaattaaagttgtaataaacatcaagtacgaagttgaaatgataaggagtttgacaaaaatgttagggtgaatacttaaa 25382585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 33180178 - 33180246
Alignment:
Q  302 aaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaaattagggtgg 370  Q
    ||||||||||||||||||| || ||| ||||||||||| |||| ||||||||| ||||| || ||||||    
T  33180178 aaattaaagttgtaataagcatcaagcacgaagttgaagtgacagagtttgacgaaaaagtttgggtgg 33180246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 6599753 - 6599823
Alignment:
Q  256 aaaattcgggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagt 328  Q
    |||| |||| ||||||||| |||||||||||||||||  |||| ||||||||||||| ||||||  |||||||    
T  6599753 aaaactcggatgaaccactaaaattaattataatata--taaatataaattaaagttataataaacattaagt 6599823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 6675206 - 6675276
Alignment:
Q  256 aaaattcgggtgaaccactgaaattaattataatatatgtaaacataaattaaagttgtaataagtattaagt 328  Q
    |||| |||| ||||||||| |||||||||||||||||  |||| ||||||||||||| ||||||  |||||||    
T  6675206 aaaactcggatgaaccactaaaattaattataatata--taaatataaattaaagttataataaacattaagt 6675276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 33454 - 33512
Alignment:
Q  302 aaattaaagttgtaataagtattaagtacgaagttgaaatgacggagtttgactaaaaa 360  Q
    ||||||||||||||||||| |||||| || |||||||| || |||||||||||||||||    
T  33454 aaattaaagttgtaataagcattaagcacaaagttgaagtgtcggagtttgactaaaaa 33512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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