View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13947_low_5 (Length: 401)

Name: NF13947_low_5
Description: NF13947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13947_low_5
NF13947_low_5
[»] scaffold0349 (3 HSPs)
scaffold0349 (49-123)||(6606-6680)
scaffold0349 (201-398)||(6340-6536)
scaffold0349 (155-196)||(6564-6605)
[»] chr6 (10 HSPs)
chr6 (49-123)||(27708201-27708275)
chr6 (49-123)||(27728027-27728101)
chr6 (85-167)||(27694308-27694390)
chr6 (85-166)||(27616182-27616263)
chr6 (201-398)||(27707935-27708131)
chr6 (201-398)||(27727761-27727957)
chr6 (85-147)||(27596239-27596301)
chr6 (155-196)||(27708159-27708200)
chr6 (155-196)||(27727985-27728026)
chr6 (203-247)||(31696623-31696667)
[»] chr8 (2 HSPs)
chr8 (85-167)||(29263737-29263819)
chr8 (130-187)||(24855563-24855619)
[»] chr2 (1 HSPs)
chr2 (128-187)||(20547124-20547182)
[»] chr7 (2 HSPs)
chr7 (129-167)||(6894364-6894402)
chr7 (203-249)||(26741773-26741819)
[»] chr5 (2 HSPs)
chr5 (128-166)||(3147193-3147231)
chr5 (204-247)||(32704479-32704522)
[»] chr1 (2 HSPs)
chr1 (130-167)||(32029796-32029833)
chr1 (139-167)||(3032195-3032223)


Alignment Details
Target: scaffold0349 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 6680 - 6606
Alignment:
Q  49 caagctgtcccatttcattccatttttgttccacttaaataaactgatgaagtgtattttacatgtgaaaatgat 123  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  6680 caagctgtcccatttcattccatttgtgttccactcaaatgaactgatgaagtgtattttacatgtgaaaatgat 6606  T

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Target: scaffold0349; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 201 - 398
Target Start/End: Complemental strand, 6536 - 6340
Alignment:
Q  201 cagaatttgaacaaaccactgttttctgctgtccacgattgacaacactagttagtttctttgtagctgtagtggaactatatttaaagtagaacagaac 300  Q
    |||||||||||||||||||| ||||||||| || | |||||  || || ||||||||||| ||| | | ||||||||||||||  | |||||||||| ||    
T  6536 cagaatttgaacaaaccactattttctgctatctatgattgggaaaacaagttagtttctgtgttgttttagtggaactatatggacagtagaacaggac 6437  T
Q  301 atgttgtcttaatctattctttctgtgtctcaaacgctgccttaaatagcttgacagagtatctcgtagacgtgaaaatgatttgtaacatatcaggc 398  Q
    ||||| |||||||||||| | | ||||   |  | | || |||||||| ||||||| ||||||| |||||||| ||||||||| || || ||||||||    
T  6436 atgttatcttaatctattatgtgtgtgaaac-gatgatgacttaaataacttgacaaagtatcttgtagacgtaaaaatgattggtgacgtatcaggc 6340  T

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Target: scaffold0349; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 6605 - 6564
Alignment:
Q  155 gtggaatttgaacgaaatcaccattgttctgcattatcgctg 196  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  6605 gtggaatttgaacgaaatcaccattgttatgcattatcgctg 6564  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 27708275 - 27708201
Alignment:
Q  49 caagctgtcccatttcattccatttttgttccacttaaataaactgatgaagtgtattttacatgtgaaaatgat 123  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  27708275 caagctgtcccatttcattccatttgtgttccactcaaatgaactgatgaagtgtattttacatgtgaaaatgat 27708201  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 27728101 - 27728027
Alignment:
Q  49 caagctgtcccatttcattccatttttgttccacttaaataaactgatgaagtgtattttacatgtgaaaatgat 123  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  27728101 caagctgtcccatttcattccatttgtgttccactcaaatgaactgatgaagtgtattttacatgtgaaaatgat 27728027  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 27694390 - 27694308
Alignment:
Q  85 aaataaactgatgaagtgtattttacatgtgaaaatgatttgggtgttgttaaatagcggctatagcgtagtggaatttgaac 167  Q
    ||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  27694390 aaataaactgatgaagtatattttaaatttgaaaatgatttgggtgttgttaaatagcggctataacgtagcagaatttgaac 27694308  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 27616263 - 27616182
Alignment:
Q  85 aaataaactgatgaagtgtattttacatgtgaaaatgatttgggtgttgttaaatagcggctatagcgtagtggaatttgaa 166  Q
    ||||||||| || |||| ||||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  27616263 aaataaactaataaagtatattttaaatttgaaaatgatttgggtgttgttaaatagcggctataacgtagcggaatttgaa 27616182  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 201 - 398
Target Start/End: Complemental strand, 27708131 - 27707935
Alignment:
Q  201 cagaatttgaacaaaccactgttttctgctgtccacgattgacaacactagttagtttctttgtagctgtagtggaactatatttaaagtagaacagaac 300  Q
    |||||||||||||||||||| ||||||||| || | |||||  || || ||||||||||| ||| | | ||||||||||||||  | |||||||||| ||    
T  27708131 cagaatttgaacaaaccactattttctgctatctatgattgggaaaacaagttagtttctgtgttgttttagtggaactatatggacagtagaacaggac 27708032  T
Q  301 atgttgtcttaatctattctttctgtgtctcaaacgctgccttaaatagcttgacagagtatctcgtagacgtgaaaatgatttgtaacatatcaggc 398  Q
    ||||| |||||||||||| | | ||||   |  | | || |||||||| ||||||| ||||||| |||||||| ||||||||| || || ||||||||    
T  27708031 atgttatcttaatctattatgtgtgtgaaac-gatgatgacttaaataacttgacaaagtatcttgtagacgtaaaaatgattggtgacgtatcaggc 27707935  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 201 - 398
Target Start/End: Complemental strand, 27727957 - 27727761
Alignment:
Q  201 cagaatttgaacaaaccactgttttctgctgtccacgattgacaacactagttagtttctttgtagctgtagtggaactatatttaaagtagaacagaac 300  Q
    |||||||||||||||||||| ||||||||| || | |||||  || || ||||||||||| ||| | | ||||||||||||||  | |||||||||| ||    
T  27727957 cagaatttgaacaaaccactattttctgctatctatgattgggaaaacaagttagtttctgtgttgttttagtggaactatatggacagtagaacaggac 27727858  T
Q  301 atgttgtcttaatctattctttctgtgtctcaaacgctgccttaaatagcttgacagagtatctcgtagacgtgaaaatgatttgtaacatatcaggc 398  Q
    ||||| |||||||||||| | | ||||   |  | | || |||||||| ||||||| ||||||| |||||||| ||||||||| || || ||||||||    
T  27727857 atgttatcttaatctattatgtgtgtgaaac-gatgatgacttaaataacttgacaaagtatcttgtagacgtaaaaatgattggtgacgtatcaggc 27727761  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 27596301 - 27596239
Alignment:
Q  85 aaataaactgatgaagtgtattttacatgtgaaaatgatttgggtgttgttaaatagcggcta 147  Q
    |||| ||||||| |||| ||||||| || |||||||||||||||||||||||||||| |||||    
T  27596301 aaattaactgattaagtatattttaaatttgaaaatgatttgggtgttgttaaatagtggcta 27596239  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 27708200 - 27708159
Alignment:
Q  155 gtggaatttgaacgaaatcaccattgttctgcattatcgctg 196  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  27708200 gtggaatttgaacgaaatcaccattgttatgcattatcgctg 27708159  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 27728026 - 27727985
Alignment:
Q  155 gtggaatttgaacgaaatcaccattgttctgcattatcgctg 196  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  27728026 gtggaatttgaacgaaatcaccattgttatgcattatcgctg 27727985  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 31696667 - 31696623
Alignment:
Q  203 gaatttgaacaaaccactgttttctgctgtccacgattgacaaca 247  Q
    ||||||||||||||| || ||||||||  ||||||||||||||||    
T  31696667 gaatttgaacaaaccgctattttctgcaatccacgattgacaaca 31696623  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 29263819 - 29263737
Alignment:
Q  85 aaataaactgatgaagtgtattttacatgtgaaaatgatttgggtgttgttaaatagcggctatagcgtagtggaatttgaac 167  Q
    ||||||||||||||||| |||||||  | |||||||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  29263819 aaataaactgatgaagtatattttaattttgaaaatgatttgggtgttgttaaatagcggctataacgtagctgaatttgaac 29263737  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 24855619 - 24855563
Alignment:
Q  130 gttgttaaatagcggctatagcgtagtggaatttgaacgaaatcaccattgttctgca 187  Q
    ||||| |||||||||  ||||||||| ||||||||||| ||||||| |||||||||||    
T  24855619 gttgtcaaatagcggtcatagcgtagcggaatttgaac-aaatcactattgttctgca 24855563  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 20547182 - 20547124
Alignment:
Q  128 gtgttgttaaatagcggctatagcgtagtggaatttgaacgaaatcaccattgttctgca 187  Q
    ||||||||||||||||||||||| || |||||||||||| |||||| |||||||||||||    
T  20547182 gtgttgttaaatagcggctatagggttgtggaatttgaa-gaaatcgccattgttctgca 20547124  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 6894402 - 6894364
Alignment:
Q  129 tgttgttaaatagcggctatagcgtagtggaatttgaac 167  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6894402 tgttgttaaatagcggctatagcgtagtggaatttgaac 6894364  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 26741819 - 26741773
Alignment:
Q  203 gaatttgaacaaaccactgttttctgctgtccacgattgacaacact 249  Q
    ||||||||||||||||||||||||| |  |||||| |||||||||||    
T  26741819 gaatttgaacaaaccactgttttctccgatccacggttgacaacact 26741773  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 3147231 - 3147193
Alignment:
Q  128 gtgttgttaaatagcggctatagcgtagtggaatttgaa 166  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  3147231 gtgttgtcaaatagcggctatagcgtagtggaatttgaa 3147193  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 32704479 - 32704522
Alignment:
Q  204 aatttgaacaaaccactgttttctgctgtccacgattgacaaca 247  Q
    ||||||||||||||||| |||||| || ||||||||||||||||    
T  32704479 aatttgaacaaaccactattttctactatccacgattgacaaca 32704522  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 32029833 - 32029796
Alignment:
Q  130 gttgttaaatagcggctatagcgtagtggaatttgaac 167  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  32029833 gttgtcaaatagcggctatagcgtagtggaattcgaac 32029796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 167
Target Start/End: Complemental strand, 3032223 - 3032195
Alignment:
Q  139 tagcggctatagcgtagtggaatttgaac 167  Q
    |||||||||||||||||||||||||||||    
T  3032223 tagcggctatagcgtagtggaatttgaac 3032195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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