View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13947_low_6 (Length: 368)
Name: NF13947_low_6
Description: NF13947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13947_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 352
Target Start/End: Complemental strand, 14260321 - 14259970
Alignment:
| Q |
7 |
gtgagatgaagttttcctcttaacttatctgtcaaatgacgaccactaaaatataaaacctgatccacatatgaaaaatagtgcactataaagatccaac |
106 |
Q |
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| T |
14260321 |
gtgacatgaagttttcctcttaacttatctgtcaaatgacgaccactaaaatataaaacctgatccacatatgaaaaatagtgcactataaagatccaac |
14260222 |
T |
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| Q |
107 |
cactnnnnnnn-ctcaccataaaataacaaacggtgtaaattttccattactttcaaatattttcatcgtcaattttccatcccttatattggaaatgta |
205 |
Q |
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| T |
14260221 |
cactaaaaaaaactcaccataaaataatgaacggtgtaaattttccattactttcaaatattttcatcgtaaattttccatcacttatattggaaatgta |
14260122 |
T |
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| Q |
206 |
gaatgaagag--acttgattataaattatcaaataattttatcatcaatttatactaaaatattttcatcatcaagaaggtaaagcgctgcaaa---ccg |
300 |
Q |
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| T |
14260121 |
gaatgaagagacacttgattataaattatcaaataattttatcatcaatttatactaaaatattttcatcgtcaagaaggtaaagcgctgcaaaccgccg |
14260022 |
T |
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| Q |
301 |
caggttaagagaaacattaaagtaggaaaacacaattttgctgcgtagaaac |
352 |
Q |
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| T |
14260021 |
caggttaagacaaacattaaagtaggaaaacacaattttgctgcgtagaaac |
14259970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 14309301 - 14309257
Alignment:
| Q |
194 |
attggaaatgtagaatgaagagacttgattataaattatcaaata |
238 |
Q |
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| T |
14309301 |
attggaaatgtagaatgaagagacttaattacaaattatcaaata |
14309257 |
T |
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