View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13948_high_10 (Length: 395)
Name: NF13948_high_10
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_high_10 |
 | |
|
| [»] scaffold0197 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0197 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 118 - 387
Target Start/End: Complemental strand, 11594 - 11327
Alignment:
| Q |
118 |
gaataacccaattgagttggtctgatagagttgacttgagactttggagtgtactcgtcatcaaggtttcgggttcgattattctcagtgccaaatattt |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||| || ||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
11594 |
gaataacccaattgggttggtctgatagcgttgacttgagaccttaaagtgtactcgtcatcaaagttttgggttcgattattctcagtgccaaatattt |
11495 |
T |
|
| Q |
218 |
ctaaagaaatgattttatgtatgagtatgacacttataatcttatcataaccatcataagatgtcttctttcacacataatattgtagagtggaatatag |
317 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11494 |
ctacagaaatgattttatgtatgagtatgacacttataatcttatcataaccatcataagatgtcttctttcacacataatattgtagagtggaatatag |
11395 |
T |
|
| Q |
318 |
ataattttctctctacacacactcactagaaaaacttgaagaagggtaaatttttatcatgtcctatgct |
387 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11394 |
ataattttctctctac--acactcactagaaaaacttgaagaagggtaaatttttatcatgtcctatgct |
11327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 11751 - 11654
Alignment:
| Q |
18 |
ataaactatcaacataaaatttgagatattggttaacatcttaattggttgctagggccattttaactttggaatccatgataaccatatttcatgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11751 |
ataaactatcaacataaaatttgagatattggttaacatcttaattggttgctagggccattttaacttttgaatccatgataaccatatttcatgat |
11654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 9876974 - 9877021
Alignment:
| Q |
122 |
aacccaattgagttggtctgatagagttgacttgagactttggagtgt |
169 |
Q |
| |
|
|||||| |||||||| |||||| | ||||||||||||||||||||||| |
|
|
| T |
9876974 |
aacccatttgagttgatctgatggtgttgacttgagactttggagtgt |
9877021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University