View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13948_high_18 (Length: 328)

Name: NF13948_high_18
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13948_high_18
NF13948_high_18
[»] scaffold0020 (2 HSPs)
scaffold0020 (1-315)||(8659-8969)
scaffold0020 (2-315)||(2246-2553)
[»] chr3 (6 HSPs)
chr3 (89-238)||(35236948-35237099)
chr3 (214-308)||(21268078-21268172)
chr3 (213-315)||(1136569-1136670)
chr3 (213-315)||(34650207-34650308)
chr3 (213-315)||(49724924-49725025)
chr3 (222-268)||(55456926-55456972)
[»] chr8 (5 HSPs)
chr8 (89-222)||(13404445-13404580)
chr8 (213-315)||(11681230-11681331)
chr8 (213-315)||(32672642-32672743)
chr8 (213-315)||(35124312-35124413)
chr8 (230-305)||(36336648-36336723)
[»] chr7 (2 HSPs)
chr7 (245-315)||(24240848-24240918)
chr7 (213-315)||(31285822-31285923)
[»] chr6 (3 HSPs)
chr6 (213-315)||(1378802-1378903)
chr6 (213-315)||(1386550-1386651)
chr6 (213-315)||(10918209-10918310)
[»] chr5 (4 HSPs)
chr5 (213-315)||(640170-640271)
chr5 (213-315)||(17640679-17640780)
chr5 (213-315)||(34088934-34089035)
chr5 (213-314)||(19877346-19877446)
[»] chr4 (2 HSPs)
chr4 (213-315)||(16507110-16507211)
chr4 (213-315)||(55978822-55978923)
[»] chr1 (4 HSPs)
chr1 (213-315)||(11343042-11343143)
chr1 (213-315)||(11501061-11501162)
chr1 (213-315)||(14283856-14283957)
chr1 (213-315)||(41729539-41729640)
[»] chr2 (4 HSPs)
chr2 (216-315)||(39618979-39619078)
chr2 (222-268)||(36765862-36765908)
chr2 (222-268)||(39257745-39257791)
chr2 (213-268)||(36765056-36765112)


Alignment Details
Target: scaffold0020 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 8659 - 8969
Alignment:
Q  1 gttcctagttggttgttcatcaacagtatctcagtaagtaacaggagagcatgccatgagttccttagctttcacacctttaagttctctagcacatttt 100  Q
    |||||||||||||||||||||||||  ||||  |  ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||    
T  8659 gttcctagttggttgttcatcaaca--atctatg--agtaacaggagagcatgacatgaattccttagctttcacacctttaagatctctagcacatttt 8754  T
Q  101 cgaattattgttttgtgacaaattttataccaaaaagtctcatatttaaaaaatctttgttaaaactagtcttcaaatatttgaagtaatctttgcacat 200  Q
     ||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8755 ggaattattgatttgtgacaaattttatgttaaaaagtctcatatttaaaaaatctttgttaaaattagtcttcaaatatttgaagtaatctttgcacat 8854  T
Q  201 aatattcaattcaatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagt 300  Q
    ||| || ||||| ||||| ||||||||||||||||||||  || |||||||||| || |||||||||| ||  |||||||||||||||||||||||||||    
T  8855 aatctttaattcgatttgtaaataatttttaaatttgaaaggggtatttgcacgcaagtgttaaatttaaggaggataattgatacataagttttaaagt 8954  T
Q  301 tgaggggggtatttg 315  Q
    |||||||||||||||    
T  8955 tgaggggggtatttg 8969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 315
Target Start/End: Complemental strand, 2553 - 2246
Alignment:
Q  2 ttcctagttggttgttcatcaacagtatctcagtaagtaacaggagagcatgccatgagttccttagctttcacacctttaagttctctagcacattttc 101  Q
    |||| ||||||||||||||||| ||||||||| |||    |||||| ||||| ||||||||||||||||||||  | |||||||||||||||| | |||     
T  2553 ttcccagttggttgttcatcaa-agtatctcaataa----caggagggcatgacatgagttccttagctttcattcatttaagttctctagcaaagttta 2459  T
Q  102 gaattattgttttgtgacaaattttataccaaaaagtctcatatttaaaaaatctttgttaaaactagtcttcaaatatttgaagtaatctttgcacata 201  Q
     |||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  2458 aaattattgttttgtgacaaattttatacaaaaaagtctcatatttgaaaaaactttgttaaaattagtcttcaaatatttgaagtaatctttgcacata 2359  T
Q  202 atattcaattcaatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagtt 301  Q
    ||||| |||| |||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||    
T  2358 atatttaatttaatttgcaaataatttttaaatttgaag-gggtatttgcacgtaagtgttaaatttgagagggatagttgatacataagttttaaagtt 2260  T
Q  302 gaggggggtatttg 315  Q
    |||||| |||||||    
T  2259 gaggggtgtatttg 2246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 89 - 238
Target Start/End: Original strand, 35236948 - 35237099
Alignment:
Q  89 ctagcacattttcgaattattgttttgtgacaaatttt--ataccaaaaagtctcatatttaaaaaatctttgttaaaactagtcttcaaatatttgaag 186  Q
    |||||||| | | |||||||||||||||||||||||||  |||  ||||||||| || || ||  |||||||||||||||||||||||||||||||||||    
T  35236948 ctagcacagtatggaattattgttttgtgacaaattttcaataaaaaaaagtcttat-ttgaaggaatctttgttaaaactagtcttcaaatatttgaag 35237046  T
Q  187 taatctttgcacataatattcaattcaatttgcaaat-aatttttaaatttga 238  Q
     ||||||||||||||| ||| |||||||||||||||| || ||||||||||||    
T  35237047 caatctttgcacataagatttaattcaatttgcaaataaagttttaaatttga 35237099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 308
Target Start/End: Complemental strand, 21268172 - 21268078
Alignment:
Q  214 atttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggg 308  Q
    ||||||| |||| |||||||||||  |  ||||||||||| ||||| |||||||||||| || || ||| ||||||||||||||| |||||||||    
T  21268172 atttgcacataagttttaaatttgggggagatatttgcacataaattttaaatttgagaggggtatttgctacataagttttaaatttgaggggg 21268078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 1136670 - 1136569
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||||||||||| ||||||  ||| |  ||||||||||  ||||| ||| ||||||| ||||||| ||||||| |||||    
T  1136670 aatttgcatataagttttacatttgaagaggatgtttgcatataagttataaatttgag-gggatatttgctacataaattttaaatttgagggtggtat 1136572  T
Q  313 ttg 315  Q
    |||    
T  1136571 ttg 1136569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 34650308 - 34650207
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||| ||||||| ||||||  ||| |  ||||||||| | ||||| ||||||||||| ||||||| ||||||| |||||    
T  34650308 aatttgcatataagttttacatttggagaggatgtttgcatataagttataaatttga-agggatatttgatacataaattttaaatttgagggtggtat 34650210  T
Q  313 ttg 315  Q
    |||    
T  34650209 ttg 34650207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 49725025 - 49724924
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||||||||||| ||||||  ||| |  ||||||||||  ||||| ||| ||||||| ||||||| |||||||  ||||    
T  49725025 aatttgcatataagttttacatttgaagaggatgtttgcatataagttataaatttgag-gggatatttgctacataaattttaaatttgagggtagtat 49724927  T
Q  313 ttg 315  Q
    |||    
T  49724926 ttg 49724924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 55456926 - 55456972
Alignment:
Q  222 ataatttttaaatttgaagaggatatttgcacgtaaatgttaaattt 268  Q
    |||| |||||||||||| | |||||| ||||||||||||||||||||    
T  55456926 ataaattttaaatttgagggggatatatgcacgtaaatgttaaattt 55456972  T

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Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 13404580 - 13404445
Alignment:
Q  89 ctagcacattttcgaattatt-gttttgtgacaaattttataccaaaaagtctcatatttaaaa-aatctttgttaaaactagtcttcaaatatttgaag 186  Q
    |||||||| ||| |||||||| ||||||||||||||||| ||  ||| |||||||||||| ||  ||||||||||||||||| ||||| |||||||||||    
T  13404580 ctagcacaatttggaattatttgttttgtgacaaattttctaaaaaacagtctcatatttgaagcaatctttgttaaaactaatcttctaatatttgaag 13404481  T
Q  187 taatctttgcacataatattcaattcaatttgcaaa 222  Q
     ||||| ||||||||| ||| |||||||||||||||    
T  13404480 caatctctgcacataagatttaattcaatttgcaaa 13404445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 11681230 - 11681331
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||||||||||| ||||||  ||| |  ||||||||||  ||||| ||| ||||||| ||||||| ||||||| |||||    
T  11681230 aatttgcatataagttttacatttgaagaggatgtttgcatataagttataaatttgag-gggatatttgctacataaattttaaatttgagggtggtat 11681328  T
Q  313 ttg 315  Q
    |||    
T  11681329 ttg 11681331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 32672743 - 32672642
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||||||||||| ||||||  ||| |  ||||||||||  ||||| ||| ||||||| ||||||| ||||||| |||||    
T  32672743 aatttgcatataagttttacatttgaagaggatgtttgcatataagttataaatttgag-gggatatttgctacataaattttaaatttgagggtggtat 32672645  T
Q  313 ttg 315  Q
    |||    
T  32672644 ttg 32672642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 35124312 - 35124413
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||||||||||| ||||||  ||| |  ||||||||||  ||||| ||| ||||||| ||||||| ||||||| |||||    
T  35124312 aatttgcatataagttttacatttgaagaggatgtttgcatataagttataaatttgag-gggatatttgctacataaattttaaatttgagggtggtat 35124410  T
Q  313 ttg 315  Q
    |||    
T  35124411 ttg 35124413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 36336723 - 36336648
Alignment:
Q  230 taaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgagg 305  Q
    ||||||||||| |||||||||||| ||||| || ||||||||   | || ||| ||||||||||||||| ||||||    
T  36336723 taaatttgaaggggatatttgcacataaattttgaatttgagggtggtatttgctacataagttttaaatttgagg 36336648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 24240918 - 24240848
Alignment:
Q  245 tatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtatttg 315  Q
    ||||| ||||||| |||||| ||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  24240918 tatttacacgtaagtgttaattttgagcaggataattggtacataagttttaaagttgaggggggtatttg 24240848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 31285923 - 31285822
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||| ||||||| ||||||  ||| |  ||||||||||| ||||| ||| ||||||| ||||||| ||||||| |||||    
T  31285923 aatttgcatataagttttacatttggagaggatgtttgcatataagttataaatttgaga-ggatatttgctacataaattttaaatttgagggtggtat 31285825  T
Q  313 ttg 315  Q
    |||    
T  31285824 ttg 31285822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 1378903 - 1378802
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||| ||||||| ||||||  ||| |  ||||||||||| ||||| ||| ||||||| ||||||| ||||||| |||||    
T  1378903 aatttgcatataagttttacatttggagaggatgtttgcatataagttataaatttgaga-ggatatttgctacataaattttaaatttgagggtggtat 1378805  T
Q  313 ttg 315  Q
    |||    
T  1378804 ttg 1378802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 1386651 - 1386550
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||| ||||||| ||||||  ||| |  ||||||||||| ||||| ||| ||||||| ||||||| ||||||| |||||    
T  1386651 aatttgcatataagttttacatttggagaggatgtttgcatataagttataaatttgaga-ggatatttgctacataaattttaaatttgagggtggtat 1386553  T
Q  313 ttg 315  Q
    |||    
T  1386552 ttg 1386550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 10918310 - 10918209
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||||||||||| ||||||  ||| |  ||||||||||  ||||| ||| ||||||| ||||||| ||||||| |||||    
T  10918310 aatttgcatataaattttacatttgaagaggatgtttgcatataagttataaatttgag-gggatatttgctacataaattttaaatttgagggtggtat 10918212  T
Q  313 ttg 315  Q
    |||    
T  10918211 ttg 10918209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 640271 - 640170
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| |||||||||| |||||||||  ||| |  ||||||||||  | ||| ||| ||||||| ||||||| |||||||||||||    
T  640271 aatttgcatataagttttacatttgaagagaatatttgcatataagttataaatttgagg-gaatatttgctacataaattttaaatttgaggggggtat 640173  T
Q  313 ttg 315  Q
    |||    
T  640172 ttg 640170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 17640780 - 17640679
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||| ||||||| ||||||  ||| |  ||||||||||| ||||| ||| ||||||| ||||||| ||||||| |||||    
T  17640780 aatttgcatataagttttacatttggagaggatgtttgcatataagttataaatttgaga-ggatatttgctacataaattttaaatttgagggtggtat 17640682  T
Q  313 ttg 315  Q
    |||    
T  17640681 ttg 17640679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 34089035 - 34088934
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||| ||||||| ||||||  ||| |  ||||||||||| ||||| ||| ||||||| ||||||| ||||||| |||||    
T  34089035 aatttgcatataagttttacatttggagaggatgtttgcatataagttataaatttgaga-ggatatttgctacataaattttaaatttgagggtggtat 34088937  T
Q  313 ttg 315  Q
    |||    
T  34088936 ttg 34088934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 19877346 - 19877446
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||||| ||| ||| ||||||||||  ||| |  ||||||||||  ||||| ||| ||||||| ||||||| |||||||||||||    
T  19877346 aatttgcatataaattttaaacttggagatgatatttgcatataagttataaatttgagg-ggatatttgctacataaattttaaatttgaggggggtat 19877444  T
Q  313 tt 314  Q
    ||    
T  19877445 tt 19877446  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 16507211 - 16507110
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||||||||||| ||||||  ||| |  ||||||||||  ||||| ||| ||||||| ||||||| ||||||| |||||    
T  16507211 aatttgcatataagttttacatttgaagaggatgtttgcatataagttataaatttgag-gggatatttgctacataaattttaaatttgagggtggtat 16507113  T
Q  313 ttg 315  Q
    |||    
T  16507112 ttg 16507110  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Complemental strand, 55978923 - 55978822
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||| ||||||| ||||||  ||| |  ||||||||||| ||||| ||| ||||||| ||||||| ||||||| |||||    
T  55978923 aatttgcatataagttttacatttggagaggatgtttgcatataagttataaatttgaga-ggatatttgctacataaattttaaatttgagggtggtat 55978825  T
Q  313 ttg 315  Q
    |||    
T  55978824 ttg 55978822  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 11343042 - 11343143
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||||||||||| ||||||  ||| |  ||||||||||  ||||| ||| ||||||| ||||||| ||||||| |||||    
T  11343042 aatttgcatataagttttacatttgaagaggatgtttgcatataagttataaatttgag-gggatatttgctacataaattttaaatttgagggtggtat 11343140  T
Q  313 ttg 315  Q
    |||    
T  11343141 ttg 11343143  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 11501061 - 11501162
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||||||||||| ||||||  ||| |  ||||||||||  ||||| ||| ||||||| ||||||| ||||||| |||||    
T  11501061 aatttgcatataagttttacatttgaagaggatgtttgcatataagttataaatttgag-gggatatttgctacataaattttaaatttgagggtggtat 11501159  T
Q  313 ttg 315  Q
    |||    
T  11501160 ttg 11501162  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 14283856 - 14283957
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||| ||||| ||||||| ||||||  ||| |  ||||||||||| ||||| ||| ||||||| ||||||| ||||||| |||||    
T  14283856 aatttgcatataagttttacatttggagaggatgtttgcatataagttataaatttgaga-ggatatttgctacataaattttaaatttgagggtggtat 14283954  T
Q  313 ttg 315  Q
    |||    
T  14283955 ttg 14283957  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 41729539 - 41729640
Alignment:
Q  213 aatttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtat 312  Q
    |||||||| |||| ||||||||||| ||||||| ||||||  ||| |  ||||||||||  ||||| ||| ||||||| ||||||| ||||||| |||||    
T  41729539 aatttgcatataagttttaaatttggagaggatgtttgcatataagttataaatttgag-gggatatttgctacataaattttaaatttgagggtggtat 41729637  T
Q  313 ttg 315  Q
    |||    
T  41729638 ttg 41729640  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 315
Target Start/End: Original strand, 39618979 - 39619078
Alignment:
Q  216 ttgcaaataatttttaaatttgaagaggatatttgcacgtaaatgttaaatttgagatggataattgatacataagttttaaagttgaggggggtatttg 315  Q
    ||||| |||| |||||| |||| ||||||||||||||  ||| |  ||||||| ||  ||||| ||| ||||||| ||||||| ||||||| ||||||||    
T  39618979 ttgcatataagttttaagtttggagaggatatttgcatataagttataaattttagggggatatttgctacataaattttaaatttgagggaggtatttg 39619078  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 36765862 - 36765908
Alignment:
Q  222 ataatttttaaatttgaagaggatatttgcacgtaaatgttaaattt 268  Q
    |||| |||||||||||| | |||||||||||| ||||||||||||||    
T  36765862 ataaattttaaatttgagggggatatttgcacataaatgttaaattt 36765908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 39257791 - 39257745
Alignment:
Q  222 ataatttttaaatttgaagaggatatttgcacgtaaatgttaaattt 268  Q
    |||| |||||||||||| |||| ||| ||||||||||||||||||||    
T  39257791 ataaattttaaatttgaggagggtatatgcacgtaaatgttaaattt 39257745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 36765112 - 36765056
Alignment:
Q  213 aatttgcaaataatttttaaattt-gaagaggatatttgcacgtaaatgttaaattt 268  Q
    |||||||| ||||||||||||||| || | || ||||||||| ||||||||||||||    
T  36765112 aatttgcacataatttttaaattttgaggggggtatttgcacataaatgttaaattt 36765056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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