View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13948_high_24 (Length: 276)

Name: NF13948_high_24
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13948_high_24
NF13948_high_24
[»] chr6 (6 HSPs)
chr6 (50-261)||(27175760-27175971)
chr6 (6-68)||(15666782-15666844)
chr6 (38-67)||(736861-736890)
chr6 (31-68)||(27334858-27334895)
chr6 (31-68)||(27395598-27395635)
chr6 (31-68)||(32644623-32644660)
[»] chr4 (15 HSPs)
chr4 (1-71)||(52430874-52430945)
chr4 (1-68)||(36444399-36444466)
chr4 (26-68)||(35017153-35017195)
chr4 (31-68)||(3475869-3475906)
chr4 (31-68)||(11012141-11012178)
chr4 (31-68)||(15515795-15515832)
chr4 (31-68)||(24088598-24088635)
chr4 (38-67)||(32464645-32464674)
chr4 (31-68)||(33093138-33093175)
chr4 (31-68)||(42853939-42853976)
chr4 (31-68)||(44272844-44272881)
chr4 (31-68)||(44626605-44626642)
chr4 (31-68)||(45764422-45764459)
chr4 (31-68)||(47014939-47014976)
chr4 (6-74)||(56557727-56557796)
[»] chr3 (14 HSPs)
chr3 (31-79)||(19418191-19418239)
chr3 (1-68)||(49196696-49196763)
chr3 (1-68)||(48944714-48944781)
chr3 (6-68)||(8254027-8254089)
chr3 (38-68)||(21239119-21239149)
chr3 (38-68)||(37134647-37134677)
chr3 (6-68)||(38944150-38944212)
chr3 (31-68)||(1295332-1295369)
chr3 (31-68)||(7867745-7867782)
chr3 (31-68)||(36799398-36799435)
chr3 (31-68)||(45528976-45529013)
chr3 (31-68)||(50559246-50559283)
chr3 (31-68)||(50652388-50652425)
chr3 (1-68)||(6178429-6178496)
[»] chr7 (13 HSPs)
chr7 (1-68)||(26153646-26153712)
chr7 (6-68)||(2347068-2347130)
chr7 (31-68)||(2323304-2323341)
chr7 (31-68)||(5068657-5068694)
chr7 (38-67)||(10014996-10015025)
chr7 (31-68)||(22692084-22692121)
chr7 (31-68)||(31785494-31785531)
chr7 (31-68)||(40693562-40693599)
chr7 (31-67)||(30818031-30818067)
chr7 (33-69)||(37832449-37832485)
chr7 (31-67)||(38547313-38547349)
chr7 (31-67)||(43171207-43171243)
chr7 (31-67)||(49025337-49025373)
[»] chr2 (14 HSPs)
chr2 (1-68)||(3091741-3091808)
chr2 (1-68)||(6666020-6666087)
chr2 (31-68)||(3299139-3299176)
chr2 (31-68)||(14255302-14255339)
chr2 (31-68)||(14891112-14891149)
chr2 (31-68)||(15141473-15141510)
chr2 (31-68)||(22303203-22303240)
chr2 (31-68)||(25086335-25086372)
chr2 (31-64)||(43621982-43622015)
chr2 (31-75)||(1040444-1040488)
chr2 (40-68)||(4319769-4319797)
chr2 (31-67)||(8087372-8087408)
chr2 (31-67)||(15505176-15505212)
chr2 (33-65)||(36175746-36175778)
[»] chr1 (19 HSPs)
chr1 (6-68)||(18610773-18610835)
chr1 (6-79)||(42256449-42256522)
chr1 (31-71)||(29293956-29293996)
chr1 (1-68)||(37843436-37843503)
chr1 (1-68)||(43755682-43755749)
chr1 (6-68)||(29489368-29489430)
chr1 (2-68)||(50017428-50017494)
chr1 (3-68)||(7371954-7372019)
chr1 (31-68)||(11947795-11947832)
chr1 (42-71)||(23472105-23472134)
chr1 (31-68)||(26585207-26585244)
chr1 (31-68)||(29706737-29706774)
chr1 (31-68)||(31184281-31184318)
chr1 (31-72)||(34395953-34395994)
chr1 (31-68)||(40139126-40139163)
chr1 (31-68)||(43612103-43612140)
chr1 (31-68)||(52261339-52261376)
chr1 (40-68)||(1689391-1689419)
chr1 (31-71)||(29264012-29264052)
[»] chr8 (10 HSPs)
chr8 (31-68)||(14531621-14531658)
chr8 (1-68)||(7678732-7678799)
chr8 (38-68)||(29913564-29913594)
chr8 (6-68)||(40380281-40380343)
chr8 (31-68)||(9985712-9985749)
chr8 (31-64)||(33511747-33511780)
chr8 (31-68)||(34037520-34037557)
chr8 (31-68)||(36497661-36497698)
chr8 (1-72)||(7598704-7598776)
chr8 (38-70)||(20852917-20852949)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-65)||(34411-34475)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-68)||(155906-155973)
[»] chr5 (9 HSPs)
chr5 (1-68)||(582871-582938)
chr5 (1-68)||(7144577-7144644)
chr5 (1-68)||(31708370-31708437)
chr5 (31-64)||(3154677-3154710)
chr5 (31-68)||(19844343-19844380)
chr5 (1-66)||(24431622-24431687)
chr5 (31-68)||(29803225-29803262)
chr5 (31-68)||(34428160-34428197)
chr5 (42-78)||(14070660-14070696)
[»] scaffold0154 (2 HSPs)
scaffold0154 (31-69)||(19725-19763)
scaffold0154 (31-68)||(4315-4352)
[»] scaffold0662 (1 HSPs)
scaffold0662 (31-68)||(1078-1115)
[»] scaffold0002 (1 HSPs)
scaffold0002 (31-68)||(440718-440755)
[»] scaffold0036 (1 HSPs)
scaffold0036 (8-68)||(18004-18064)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 50 - 261
Target Start/End: Complemental strand, 27175971 - 27175760
Alignment:
Q  50 tgtacaaatatcatttctcctttcttatcaagtac-cttatatgacatgtcaggattgtttgcttgaaatcaaacatactcgttttacaatatgaattta 148  Q
    ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  27175971 tgtacaaatatcatttctcctttcttatcaagtactcttacatcacatgtcaggattgtttgcttgaaatcaaacat----gttttacaatatgaattta 27175876  T
Q  149 gagaataaagaatatggaaactcaacattttgtgaatagtaaaattgaacggaagaagtgagcg-cacaa--tatattgatccacattgtgtgtatatag 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||||||||||    
T  27175875 gagaataaagaatatggaaactcaacattttgtgaatagtaaaattgaacggaagaagtgagtgttacaatgtgtattgatccacattgtgtgtatatag 27175776  T
Q  246 tttgctaacttaaacc 261  Q
    |||||||| |||||||    
T  27175775 tttgctaatttaaacc 27175760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 15666782 - 15666844
Alignment:
Q  6 tgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| |||||||||| | || | |||||| ||| ||||| |||||||||||||||||||||    
T  15666782 tgagtatgagtgagaaagttgttaaaaagttgtcagaaaatggttgtacaaatatcatttctc 15666844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 67
Target Start/End: Original strand, 736861 - 736890
Alignment:
Q  38 tcataaaatagttgtacaaatatcatttct 67  Q
    ||||||||||||||||||||||||||||||    
T  736861 tcataaaatagttgtacaaatatcatttct 736890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 27334895 - 27334858
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  27334895 aaagttgtcacaaaatagttgtacaaatatcatttctc 27334858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 27395635 - 27395598
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  27395635 aaagttgtcacaaaatagttgtacaaatatcatttctc 27395598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 32644660 - 32644623
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  32644660 aaagttgtcaaaaaatagttgtacaaatatcatttctc 32644623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 52430945 - 52430874
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaa-gttttcataaaatagttgtacaaatatcatttctcctt 71  Q
    ||||||||||||||| |||||||| || | ||| ||| |||||||||||||||||||||||||||| |||||    
T  52430945 taatatgagtacgagagagaaaattgtcataaaagttgtcataaaatagttgtacaaatatcatttttcctt 52430874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 36444399 - 36444466
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||| |||||| ||| |||||| | || | |||||| ||||||||| |||||||||||||||||||||    
T  36444399 taatgtgagtatgagagagaaagttgttaaaaagttatcataaaatggttgtacaaatatcatttctc 36444466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 35017195 - 35017153
Alignment:
Q  26 gtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||| |||||| ||| |||||||||||||||||||||||||||    
T  35017195 gtaaaaaagttgtcacaaaatagttgtacaaatatcatttctc 35017153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 3475906 - 3475869
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  3475906 aaagttgtcataaaatggttgtacaaatatcatttctc 3475869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 11012178 - 11012141
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  11012178 aaagttgtcataaaatggttgtacaaatatcatttctc 11012141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 15515832 - 15515795
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  15515832 aaagttgtcataaaatagttgtaccaatatcatttctc 15515795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 24088598 - 24088635
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  24088598 aaagttgtcataaaatggttgtacaaatatcatttctc 24088635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 67
Target Start/End: Original strand, 32464645 - 32464674
Alignment:
Q  38 tcataaaatagttgtacaaatatcatttct 67  Q
    ||||||||||||||||||||||||||||||    
T  32464645 tcataaaatagttgtacaaatatcatttct 32464674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 33093138 - 33093175
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  33093138 aaagttgtcacaaaatagttgtacaaatatcatttctc 33093175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 42853976 - 42853939
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  42853976 aaagttgtcaaaaaatagttgtacaaatatcatttctc 42853939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 44272844 - 44272881
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  44272844 aaagttgtcaaaaaatagttgtacaaatatcatttctc 44272881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 44626642 - 44626605
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  44626642 aaagttatcataaaatagttgttcaaatatcatttctc 44626605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 45764422 - 45764459
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  45764422 aaagttgtcataaaatagttgtataaatatcatttctc 45764459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 47014976 - 47014939
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  47014976 aaagttgtcacaaaatagttgtacaaatatcatttctc 47014939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 56557796 - 56557727
Alignment:
Q  6 tgagtacgagtgagaaaatggtaacaaa-gttttcataaaatagttgtacaaatatcatttctcctttct 74  Q
    |||||| ||| |||||||| || ||||| ||| ||||||||| ||||| ||||||||||||||| |||||    
T  56557796 tgagtatgagagagaaaattgtcacaaaagttgtcataaaattgttgttcaaatatcatttctcttttct 56557727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 19418191 - 19418239
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctcctttcttatca 79  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  19418191 aaagttgtcataaaatggttgtacaaatatcatttctcatttcttatca 19418239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 49196763 - 49196696
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||| |||||| ||| |||||||| || |||||||| ||| ||||| |||||||||||||||||||||    
T  49196763 taatgtgagtatgagagagaaaattgtcacaaagttgtcacaaaatggttgtacaaatatcatttctc 49196696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 48944714 - 48944781
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    ||||||||||| ||| |||||||| |||  |||||| | | ||||| |||||||||||||||||||||    
T  48944714 taatatgagtatgagagagaaaattgtacaaaagttgttagaaaatggttgtacaaatatcatttctc 48944781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 8254089 - 8254027
Alignment:
Q  6 tgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||| | ||| ||||||| ||| ||||| |||||||||||||||||||||    
T  8254089 tgagtatgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctc 8254027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 21239119 - 21239149
Alignment:
Q  38 tcataaaatagttgtacaaatatcatttctc 68  Q
    |||||||||||||||||||||||||||||||    
T  21239119 tcataaaatagttgtacaaatatcatttctc 21239149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 37134647 - 37134677
Alignment:
Q  38 tcataaaatagttgtacaaatatcatttctc 68  Q
    |||||||||||||||||||||||||||||||    
T  37134647 tcataaaatagttgtacaaatatcatttctc 37134677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 38944150 - 38944212
Alignment:
Q  6 tgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||| |||  |||||| ||| ||| |||||||||||||||||||||||    
T  38944150 tgagtatgagagagaaaattgtacaaaagttgtcacaaattagttgtacaaatatcatttctc 38944212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 1295369 - 1295332
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  1295369 aaagttatcacaaaatagttgtacaaatatcatttctc 1295332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 7867745 - 7867782
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  7867745 aaagttgtcacaaaatagttgtacaaatatcatttctc 7867782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 36799435 - 36799398
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  36799435 aaagttatcaaaaaatagttgtacaaatatcatttctc 36799398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 45528976 - 45529013
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  45528976 aaagttgtcaaaaaatagttgtacaaatatcatttctc 45529013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 50559246 - 50559283
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  50559246 aaagttgtcaaaaaatagttgtacaaatatcatttctc 50559283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 50652425 - 50652388
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  50652425 aaagttgtcataaaatggttgtacaaatatcatttctc 50652388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 6178429 - 6178496
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaa-gttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||| |||||| ||| |||||||| || ||||| ||| ||| |||||||||||||||||||||||||||    
T  6178429 taatgtgagtatgagagagaaaattgtcacaaaagttgtca-aaaatagttgtacaaatatcatttctc 6178496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 26153712 - 26153646
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||| |||||| ||| |||||||| || | |||||| |||||||||||||||||||||||||||||||    
T  26153712 taatgtgagtatgagagagaaaattgtca-aaagttgtcataaaatagttgtacaaatatcatttctc 26153646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 2347068 - 2347130
Alignment:
Q  6 tgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||| | ||| ||||||| ||| ||||| |||||||||||||||||||||    
T  2347068 tgagtatgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctc 2347130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 2323341 - 2323304
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  2323341 aaagttgtcataaaattgttgtacaaatatcatttctc 2323304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 5068657 - 5068694
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  5068657 aaagttatcataaaatggttgtacaaatatcatttctc 5068694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 67
Target Start/End: Original strand, 10014996 - 10015025
Alignment:
Q  38 tcataaaatagttgtacaaatatcatttct 67  Q
    ||||||||||||||||||||||||||||||    
T  10014996 tcataaaatagttgtacaaatatcatttct 10015025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 22692121 - 22692084
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  22692121 aaagttgtcataaaatggttgtacaaatatcatttctc 22692084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 31785494 - 31785531
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||||||||||| | |||||||||||||||||||||    
T  31785494 aaagttttcataaagtggttgtacaaatatcatttctc 31785531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 40693562 - 40693599
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  40693562 aaagttgtcaaaaaatagttgtacaaatatcatttctc 40693599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 30818031 - 30818067
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttct 67  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  30818031 aaagttgtcataaaatggttgtacaaatatcatttct 30818067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 37832485 - 37832449
Alignment:
Q  33 agttttcataaaatagttgtacaaatatcatttctcc 69  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  37832485 agttgtcacaaaatagttgtacaaatatcatttctcc 37832449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 38547313 - 38547349
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttct 67  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  38547313 aaagttgtcaaaaaatagttgtacaaatatcatttct 38547349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 43171207 - 43171243
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttct 67  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  43171207 aaagttgtcataaaatggttgtacaaatatcatttct 43171243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 49025337 - 49025373
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttct 67  Q
    |||||| |||||||||| |||||||||||||||||||    
T  49025337 aaagttgtcataaaataattgtacaaatatcatttct 49025373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 3091808 - 3091741
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||| |||||| ||| |||||||| || | |||||| ||| |||||||||||||||||||||||||||    
T  3091808 taatgtgagtatgagagagaaaattgtcaaaaagttatcacaaaatagttgtacaaatatcatttctc 3091741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 6666087 - 6666020
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||| |||||| ||| |||||| | |||| |||||| | ||||||| |||||||||||||||||||||    
T  6666087 taatgtgagtatgagagagaaagtcgtaaaaaagttgtaataaaatggttgtacaaatatcatttctc 6666020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 3299139 - 3299176
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  3299139 aaagttgtcataaaatggttgtacaaatatcatttctc 3299176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 14255339 - 14255302
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  14255339 aaagttgtcataaaatagttgtacaaatattatttctc 14255302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 14891112 - 14891149
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  14891112 aaagttatcacaaaatagttgtacaaatatcatttctc 14891149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 15141510 - 15141473
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  15141510 aaagttgtcataaaatagatgtacaaatatcatttctc 15141473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 22303240 - 22303203
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  22303240 aaagttgtcaaaaaatagttgtacaaatatcatttctc 22303203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 25086372 - 25086335
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  25086372 aaagttgtcataaaattgttgtacaaatatcatttctc 25086335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 43621982 - 43622015
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatt 64  Q
    |||||| |||||||||||||||||||||||||||    
T  43621982 aaagttgtcataaaatagttgtacaaatatcatt 43622015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 1040444 - 1040488
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctcctttctt 75  Q
    |||||| ||||||||||||||| | ||||||||||||| ||||||    
T  1040444 aaagttgtcataaaatagttgttcgaatatcatttctcttttctt 1040488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 4319797 - 4319769
Alignment:
Q  40 ataaaatagttgtacaaatatcatttctc 68  Q
    |||||||||||||||||||||||||||||    
T  4319797 ataaaatagttgtacaaatatcatttctc 4319769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 8087408 - 8087372
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttct 67  Q
    |||||| |||||||||| |||||||||||||||||||    
T  8087408 aaagttgtcataaaataattgtacaaatatcatttct 8087372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 15505212 - 15505176
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttct 67  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  15505212 aaagttatcataaaatagttgttcaaatatcatttct 15505176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 36175778 - 36175746
Alignment:
Q  33 agttttcataaaatagttgtacaaatatcattt 65  Q
    |||| ||||||||||||||||||||||||||||    
T  36175778 agttgtcataaaatagttgtacaaatatcattt 36175746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 18610835 - 18610773
Alignment:
Q  6 tgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||| | |||| |||||| ||| |||||||||||||||||||||||||||    
T  18610835 tgagtatgagagagaaagttgtaaaaaagttgtcacaaaatagttgtacaaatatcatttctc 18610773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 42256522 - 42256449
Alignment:
Q  6 tgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctcctttcttatca 79  Q
    |||||| ||| |||||| | ||| ||||||| ||| ||||| ||||||||||||||||||||| ||| ||||||    
T  42256522 tgagtatgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctcttttattatca 42256449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 29293996 - 29293956
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctcctt 71  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  29293996 aaagttgtcataaagtagttgtacaaatatcatttctcctt 29293956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 37843436 - 37843503
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||| |||||| ||| |||||| | || |||||||| ||| ||| |||||||||||||||||||||||    
T  37843436 taatgtgagtatgagagagaaagttgtcacaaagttgtcaaaaagtagttgtacaaatatcatttctc 37843503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 43755682 - 43755749
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    ||||||||||| ||  |||||||| || | ||| || ||||||||| |||||||||||||||||||||    
T  43755682 taatatgagtatgaaagagaaaattgtcaaaaaattatcataaaatggttgtacaaatatcatttctc 43755749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 29489368 - 29489430
Alignment:
Q  6 tgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||| | ||| ||||||| ||| ||||| |||||||||||||||||||||    
T  29489368 tgagtatgagagagaaagttgtaccaaagttatcacaaaatggttgtacaaatatcatttctc 29489430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 50017428 - 50017494
Alignment:
Q  2 aatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||||||| ||| |||||| | || | |||||| | ||||||| |||||||||||||||||||||    
T  50017428 aatatgagtatgagagagaaagttgtcaaaaagttgtaataaaattgttgtacaaatatcatttctc 50017494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 7371954 - 7372019
Alignment:
Q  3 atatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||| |||| ||| |||||||| |||  ||| || ||||||| |||||||||||||||||||||||    
T  7371954 atataagtatgagagagaaaattgtacaaaaattgtcataaattagttgtacaaatatcatttctc 7372019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 11947832 - 11947795
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  11947832 aaagttgtcataaaatggttgtacaaatatcatttctc 11947795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 23472134 - 23472105
Alignment:
Q  42 aaaatagttgtacaaatatcatttctcctt 71  Q
    ||||||||||||||||||||||||||||||    
T  23472134 aaaatagttgtacaaatatcatttctcctt 23472105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 26585207 - 26585244
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  26585207 aaagttatcacaaaatagttgtacaaatatcatttctc 26585244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 29706737 - 29706774
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  29706737 aaagttatcataaaatggttgtacaaatatcatttctc 29706774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 31184318 - 31184281
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  31184318 aaagttgtcataaaatggttgtacaaatatcatttctc 31184281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 34395953 - 34395994
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctccttt 72  Q
    |||||| ||||||||||| |||||||||||||||| ||||||    
T  34395953 aaagttgtcataaaatagatgtacaaatatcatttatccttt 34395994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 40139163 - 40139126
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  40139163 aaagttgtcataaaatggttgtacaaatatcatttctc 40139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 43612103 - 43612140
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  43612103 aaagttgtcataaaatggttgtacaaatatcatttctc 43612140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 52261376 - 52261339
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  52261376 aaagttatcataaaatagttgttcaaatatcatttctc 52261339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 1689419 - 1689391
Alignment:
Q  40 ataaaatagttgtacaaatatcatttctc 68  Q
    |||||||||||||||||||||||||||||    
T  1689419 ataaaatagttgtacaaatatcatttctc 1689391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 29264052 - 29264012
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctcctt 71  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  29264052 aaagttgtcataaagtggttgtacaaatatcatttctcctt 29264012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 14531658 - 14531621
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| |||||||||||||||||||||||||||||||    
T  14531658 aaagttatcataaaatagttgtacaaatatcatttctc 14531621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7678799 - 7678732
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||| |||||| ||| |||||||| || |||||||| ||| ||| | |||||||||||||||||||||    
T  7678799 taatgtgagtatgagagagaaaattgtcacaaagttgtcaaaaagtggttgtacaaatatcatttctc 7678732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 29913594 - 29913564
Alignment:
Q  38 tcataaaatagttgtacaaatatcatttctc 68  Q
    |||||||||||||||||||||||||||||||    
T  29913594 tcataaaatagttgtacaaatatcatttctc 29913564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 40380343 - 40380281
Alignment:
Q  6 tgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||| | |||  |||||| ||||||||||| |||||||||||||||||||    
T  40380343 tgagtatgagagagaaagttgtacaaaagttgtcataaaatagatgtacaaatatcatttctc 40380281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 9985712 - 9985749
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  9985712 aaagttgtcataaaatagatgtacaaatatcatttctc 9985749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 33511747 - 33511780
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatt 64  Q
    |||||||||| |||||||||||||||||||||||    
T  33511747 aaagttttcacaaaatagttgtacaaatatcatt 33511780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 34037520 - 34037557
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  34037520 aaagttatcataaaatagttgtacaaatatcatctctc 34037557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 36497698 - 36497661
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  36497698 aaagttgtcacaaaatagttgtacaaatatcatttctc 36497661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 7598776 - 7598704
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaa-gttttcataaaatagttgtacaaatatcatttctccttt 72  Q
    |||| |||||| ||| |||||| |||| ||||| ||| ||| ||||| ||||| |||||||||||||||||||    
T  7598776 taatgtgagtatgagagagaaagtggtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctccttt 7598704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 20852949 - 20852917
Alignment:
Q  38 tcataaaatagttgtacaaatatcatttctcct 70  Q
    ||||||||| |||||||||||||||||||||||    
T  20852949 tcataaaatggttgtacaaatatcatttctcct 20852917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34475 - 34411
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcattt 65  Q
    |||| |||||| ||| |||||| | || |||||||| ||| ||||||||||||||||||||||||    
T  34475 taatgtgagtatgagagagaaagttgtcacaaagttgtcaaaaaatagttgtacaaatatcattt 34411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 155973 - 155906
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||| |||||||||| |||||| | || | |||||| | ||||||| |||||||||||||||||||||    
T  155973 taatgtgagtacgagagagaaagttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctc 155906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 582871 - 582938
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    ||||||||||| ||| |||||||| ||   |||||| ||| |||||||||||| ||||||||||||||    
T  582871 taatatgagtatgagagagaaaattgtttaaaagttatcacaaaatagttgtaaaaatatcatttctc 582938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7144644 - 7144577
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    ||||||||||| ||| |||||| | ||   |||||| ||||||||| |||||||||||||||||||||    
T  7144644 taatatgagtatgagagagaaagttgtttaaaagttatcataaaatggttgtacaaatatcatttctc 7144577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 31708437 - 31708370
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    ||||||||||| ||| |||||| | || | |||||| | ||||||| |||||||||||||||||||||    
T  31708437 taatatgagtatgagagagaaagttgtcaaaaagttgttataaaatggttgtacaaatatcatttctc 31708370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 3154677 - 3154710
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatt 64  Q
    |||||| |||||||||||||||||||||||||||    
T  3154677 aaagttatcataaaatagttgtacaaatatcatt 3154710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 19844343 - 19844380
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  19844343 aaagttatcaaaaaatagttgtacaaatatcatttctc 19844380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24431622 - 24431687
Alignment:
Q  1 taatatgagtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttc 66  Q
    ||||||||||| ||| |||||||| || | |||||| || |||| | |||||||||||||||||||    
T  24431622 taatatgagtatgagagagaaaattgtcaaaaagttgtcttaaagtggttgtacaaatatcatttc 24431687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 29803262 - 29803225
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  29803262 aaagttgtcaaaaaatagttgtacaaatatcatttctc 29803225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 34428197 - 34428160
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  34428197 aaagttgtcaaaaaatagttgtacaaatatcatttctc 34428160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 14070660 - 14070696
Alignment:
Q  42 aaaatagttgtacaaatatcatttctcctttcttatc 78  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  14070660 aaaatagttgtacaaatatcatttctcatttattatc 14070696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 19725 - 19763
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctcc 69  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  19725 aaagttgtcacaaaatagttgtacaaatatcatttctcc 19763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 4352 - 4315
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  4352 aaagttatcataaaatggttgtacaaatatcatttctc 4315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 1115 - 1078
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  1115 aaagttgtcacaaaatagttgtacaaatatcatttctc 1078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 440755 - 440718
Alignment:
Q  31 aaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  440755 aaagttgtcataaagtagttgtacaaatatcatttctc 440718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 18064 - 18004
Alignment:
Q  8 agtacgagtgagaaaatggtaacaaagttttcataaaatagttgtacaaatatcatttctc 68  Q
    |||| ||| |||||||| || |||||||| ||| |||||| |||| |||||||||||||||    
T  18064 agtatgagagagaaaattgtcacaaagttgtcaaaaaataattgtccaaatatcatttctc 18004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University