View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_high_8 (Length: 426)
Name: NF13948_high_8
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 6753412 - 6753021
Alignment:
| Q |
18 |
agtaaatgaactaccagtagcaccaagatcaagcaaccgacatttttcaatcatatcagcatatttagtagcacctgatagcgaatactctcctccacgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6753412 |
agtaaatgaactaccagtagcaccaagatcaagcaaccgacatttttcaatcatatcagcatatttagtagcacctgatagtgaatactctcctccacgc |
6753313 |
T |
|
| Q |
118 |
acttctgaaggaagaagaatttcattgaaatcacccataagaagccaagggccattaagatgaggtcgtaaggaattcaagtaggaccaaagatggtcac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6753312 |
acttctgaaggaagaagaatttcattgaaatcacccataagaagccaagggccattaagatgaggtcgtaaggaattcaagtagggccaaagatggtcac |
6753213 |
T |
|
| Q |
218 |
gatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagctatagtgatagattgaaaatagttatctataat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6753212 |
gatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagctatagtgatagattgaaaatagttatctataat |
6753113 |
T |
|
| Q |
318 |
ctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaattgcacaatcctcatagccta |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6753112 |
ctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaattgcacaatcctcatagccta |
6753021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 1811122 - 1811513
Alignment:
| Q |
18 |
agtaaatgaactaccagtagcaccaagatcaagcaaccgacatttttcaatcatatcagcatatttagtagcacctgatagcgaatactctcctccacgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1811122 |
agtaaatgaactaccagtagcaccaagatcaagcaaccgatatttttcaatcatatcagcatatttagtagcacctgatagtgaatactctcctccacgt |
1811221 |
T |
|
| Q |
118 |
acttctgaaggaagaagaatttcattgaaatcacccataagaagccaagggccattaagatgaggtcgtaaggaattcaagtaggaccaaagatggtcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
1811222 |
acttctgaaggaagaagaatttcattgaaatcactcataagaagccaaggaccattaagatgaggtcgtaagcaattcaaataggaccaaagatgatcac |
1811321 |
T |
|
| Q |
218 |
gatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagctatagtgatagattgaaaatagttatctataat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1811322 |
gatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagctatagtgatagattgaaaatagttatctataat |
1811421 |
T |
|
| Q |
318 |
ctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaattgcacaatcctcatagccta |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1811422 |
ctcaatatcatatgtgcaattttgagattttaatatccatatacctccagagtgtccacgagcttcagaaattgcacaattctcatagccta |
1811513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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