View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_10 (Length: 428)
Name: NF13948_low_10
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 34866112 - 34866504
Alignment:
| Q |
18 |
atgaaccgctactaatggtcaactctgtataagatactaaacccctactgtgaatagaggaaagacacattcaactatatatcaatatttatctgtagaa |
117 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34866112 |
atgacccgctactaatggtcaactctgtatacgatactaaacccctactgtgaatagaggaaagacacgttcaactatatatcaatatttatctgtagaa |
34866211 |
T |
|
| Q |
118 |
ccagcaggtaatttataaaagcaatgtaactcctgcatagcacaaggttttattgctttatatatttctaataggaataagtaatctcgtattcgataag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866212 |
ccagcaggtaatttataaaagcaatgtaactcctgcatagcacaaggttttattgctttatatatttctaataggaataagtaatctcgtattcgataag |
34866311 |
T |
|
| Q |
218 |
tattgaagcacttgcaaaaccggctacactacaaagctttactcgagctttccagttagcccttctgtaggtagcactttgtgagacatcgacaaccagt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866312 |
tattgaagcacttgcaaaaccggctacactacaaagctttactcgagctttccagttagcccttctgtaggtagcactttgtgagacatcgacaaccag- |
34866410 |
T |
|
| Q |
318 |
ctctctgataccatttgataagtagtcgagagcctttgaagaaatctcccttaaagctagctgtcaagaaggaagaacctaacaactcaaatact |
412 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866411 |
-tctctgataccatttgataagtagtcgagagcatttggagaaatctcccttaaagctagctgtcaagaaggaagaacctaacaactcaaatact |
34866504 |
T |
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