View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13948_low_14 (Length: 390)

Name: NF13948_low_14
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13948_low_14
NF13948_low_14
[»] chr8 (2 HSPs)
chr8 (13-244)||(29678981-29679211)
chr8 (322-374)||(29679388-29679440)
[»] chr1 (6 HSPs)
chr1 (13-244)||(26460198-26460428)
chr1 (15-196)||(27996829-27997009)
chr1 (15-199)||(27997044-27997226)
chr1 (13-196)||(27987660-27987842)
chr1 (13-199)||(27987435-27987623)
chr1 (322-374)||(26460605-26460657)
[»] chr2 (1 HSPs)
chr2 (16-241)||(11490231-11490455)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 29678981 - 29679211
Alignment:
Q  13 cctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcgaagaatatcagtcaaaactcttta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  29678981 cctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtc-accaatatcagtcaaaactcttta 29679079  T
Q  113 tacattttcatttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgaatcattgtcagcagaaccgg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29679080 tacattttcatttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgaatcattgtccgcagaaccgg 29679179  T
Q  213 attcaaacattcaaggtgggctagtttttctt 244  Q
    |||||||||||||||||||| |||||| ||||    
T  29679180 attcaaacattcaaggtgggttagtttctctt 29679211  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 29679388 - 29679440
Alignment:
Q  322 agatattcgcactaatggtatctgcatttttcattataggtcttggaagcaat 374  Q
    ||||||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  29679388 agatatttgcactaatggtatctgcattttgcattttaggtcttggaagcaat 29679440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 26460198 - 26460428
Alignment:
Q  13 cctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcgaagaatatcagtcaaaactcttta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||  |||| ||||    
T  26460198 cctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtc-accaatatcagtccgaactattta 26460296  T
Q  113 tacattttcatttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgaatcattgtcagcagaaccgg 212  Q
      ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||| |     
T  26460297 ctcattttcctttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgagtctttgcccgcagaacagt 26460396  T
Q  213 attcaaacattcaaggtgggctagtttttctt 244  Q
    |||||||||||||||||||| |||||| ||||    
T  26460397 attcaaacattcaaggtgggttagtttctctt 26460428  T

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Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 27996829 - 27997009
Alignment:
Q  15 tgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcgaagaatatcagtcaaaactctttata 114  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||| ||||||||||     
T  27996829 tgtgtttttctttttcagatgtgagcatggcctttgttgagttacctcctgaactttgctctataatcatgtc-accaatatcagtcagaactctttatt 27996927  T
Q  115 cattttcatttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgaatca 196  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  27996928 cattttcatttattccatcgatcatgcatatacttgagtcattgcttttagctttaaactttaaaaagatgcatttgaatca 27997009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 27997226 - 27997044
Alignment:
Q  15 tgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcgaagaatatcagtcaaaactctttata 114  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |  ||||||||||| ||||||||||     
T  27997226 tgtgtttttctttgtcagatgtgagcaagacctttgtagagttaccttctgaactttgttctataatcatgtc-atcaatatcagtcagaactctttatt 27997128  T
Q  115 cattttcatttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgaatcattg 199  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27997127 cattttcatt-attccatcgatcatgcatagactagagtcattgcttgtagctttgaactttaaaacgatgcatttgaatcattg 27997044  T

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Target: chr1; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 27987842 - 27987660
Alignment:
Q  13 cctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcgaagaatatcagtcaaaactcttta 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |  ||||||| ||| |  ||||||    
T  27987842 cctgtgtttttctttttcagatgtgagtaagacctttgttgagttacctcctgaactttgctctataatcatgtt-actaatatcaatcagatatcttta 27987744  T
Q  113 tacattttcatttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgaatca 196  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  27987743 ttcattttcatttattccatcgatcatgcatagactttagtcattgcttttagctatgaactttaaaaagatgcatttgaatca 27987660  T

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Target: chr1; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 27987435 - 27987623
Alignment:
Q  13 cctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcgaagaatatcagtcaaaactcttta 112  Q
    ||||||||||| |||||||||||||||||||||||||||| | ||||||  ||||||||| |||||||||||||| |  ||||||||||| |||||||||    
T  27987435 cctgtgtttttatttttcagatgtgagcaagacctttgttaacttaccttatgaactttgttctataatcatgtc-accaatatcagtcagaactcttta 27987533  T
Q  113 tacattttcatttattccatcgatcatgcatagacttgagtc---attgcttgtagctttgaactttaaaaagatgcatttgaatcattg 199  Q
    | ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| ||||||||||||||    
T  27987534 ttcattttcatttattccatcgatcatgcatagacttgagtcattattgcttgtagctttgaactttaaaaagatacatttgaatcattg 27987623  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 26460605 - 26460657
Alignment:
Q  322 agatattcgcactaatggtatctgcatttttcattataggtcttggaagcaat 374  Q
    ||||||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  26460605 agatatttgcactaatggtatctgcattttgcattttaggtcttggaagcaat 26460657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 11490455 - 11490231
Alignment:
Q  16 gtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcgaagaatatcagtcaaaactctttatac 115  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |  | || || | |  || ||||||||    
T  11490455 gtgtttttctttttcagatgtgagcaagacctttgttgaattacctcctgaactctgctctataatcatgtc-accagtaccacttagcacactttatac 11490357  T
Q  116 attttcatttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgaatcattgtcagcagaaccggatt 215  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||  ||||  |||||||||| |||||||||| || |||| |  || |||  ||||    
T  11490356 attttcatttattccatcgatcatgcatagacttgagtctttgcttggtgcttataactttaaaaggatgcatttggattattgcccacaaaacaagatt 11490257  T
Q  216 caaacattcaaggtgggctagttttt 241  Q
    ||||||||||||||||||||||||||    
T  11490256 caaacattcaaggtgggctagttttt 11490231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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