View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_15 (Length: 382)
Name: NF13948_low_15
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 9 - 381
Target Start/End: Original strand, 26174488 - 26174860
Alignment:
| Q |
9 |
aaccacatcagcaatgcgtggattaaaattcatcattctgatttaccctactcattagctagatttccttcacaaacaagcaaagcaatgagaacatgca |
108 |
Q |
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| T |
26174488 |
aaccacatcagcaatgcgtggattaaaattcatcattctgatttagcctactcattagctagatttccttcacaaacaagcaaagcaatgagaacatgca |
26174587 |
T |
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| Q |
109 |
gccccataaataaaatacataaatacatgccatgcttatataaaatgaaacaaaatgaatggtttgccaatgaaccaacatgaatacaccttagtgctag |
208 |
Q |
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| T |
26174588 |
gcaccataaataaaatacataaatacatgccatgcttatataaaatgaaacaaaatgaatggtttgccaatgaaccaacatgaatacaccttagtgctag |
26174687 |
T |
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| Q |
209 |
tagtggtgctggtgcacgcagggtgtaattccctgttaaatcaaaacacagattctaattaatcattttaatcataatcaatgtcagcaccgtttcatac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26174688 |
tagtggtgctggtgcacgcagggtgtaattccctgttaaatcaaaacacagattctaattaatcattttaatcataatcaatgtcagcaccgtttcatac |
26174787 |
T |
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| Q |
309 |
atagcgtggactagcttatgattcaattaccgttgattaatttaacgtatgacttctaaaatattagtataat |
381 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26174788 |
atagcgtggactagcttatgattcaattactgttgattaatttaacgtatgacttctaaaatattattataat |
26174860 |
T |
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