View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13948_low_17 (Length: 359)

Name: NF13948_low_17
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13948_low_17
NF13948_low_17
[»] chr4 (5 HSPs)
chr4 (24-184)||(7054380-7054540)
chr4 (182-343)||(7054177-7054338)
chr4 (188-343)||(1702316-1702473)
chr4 (188-343)||(9990968-9991125)
chr4 (188-314)||(16613348-16613476)
[»] chr2 (4 HSPs)
chr2 (24-181)||(38980940-38981097)
chr2 (182-343)||(38981138-38981299)
chr2 (52-184)||(24867259-24867391)
chr2 (191-261)||(24867137-24867207)
[»] scaffold0442 (2 HSPs)
scaffold0442 (24-184)||(12223-12383)
scaffold0442 (182-343)||(12020-12181)
[»] scaffold0320 (2 HSPs)
scaffold0320 (32-184)||(13604-13756)
scaffold0320 (182-343)||(13798-13959)
[»] chr8 (4 HSPs)
chr8 (24-184)||(8212373-8212533)
chr8 (24-184)||(9290634-9290794)
chr8 (184-343)||(9290838-9290997)
chr8 (182-343)||(8212575-8212735)
[»] chr3 (2 HSPs)
chr3 (182-343)||(51425028-51425189)
chr3 (24-184)||(51424827-51424986)
[»] chr6 (2 HSPs)
chr6 (72-180)||(24999465-24999573)
chr6 (188-237)||(24999629-24999678)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 7054540 - 7054380
Alignment:
Q  24 attcattccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatgg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7054540 attcattccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatgg 7054441  T
Q  124 tgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7054440 tgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 7054380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 182 - 343
Target Start/End: Complemental strand, 7054338 - 7054177
Alignment:
Q  182 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 281  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7054338 caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 7054239  T
Q  282 tcaagtattatgacacacaatttggaacagtccataaattatggttactatttttgtttgtt 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7054238 tcaagtattatgacacacaatttggaacagtccataaattatggttaccatttttgtttgtt 7054177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 188 - 343
Target Start/End: Complemental strand, 1702473 - 1702316
Alignment:
Q  188 agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatga--atatacatgctcaa 285  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||| |||| |||||||||| ||||||||  || ||||||  ||||||||||||||    
T  1702473 agatcaaagtaccaagagaaggtgcaaaaaatatggaaacaaagccacgtagtaggatgaaaaggccaagtagagcggggatgattatatacatgctcaa 1702374  T
Q  286 gtattatgacacacaatttggaacagtccataaattatggttactatttttgtttgtt 343  Q
    ||||||||||||||||||||||| |||||  |||| |||||||| | |||||||||||    
T  1702373 gtattatgacacacaatttggaatagtcccaaaataatggttaccagttttgtttgtt 1702316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 188 - 343
Target Start/End: Complemental strand, 9991125 - 9990968
Alignment:
Q  188 agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatga--atatacatgctcaa 285  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||| |||| |||||||||| ||||||||  || ||||||  ||||||||||||||    
T  9991125 agatcaaagtaccaagagaaggtgcaaaaaatatggaaacaaagccacgtagttggatgaaaaggccaagtagagcggggatgattatatacatgctcaa 9991026  T
Q  286 gtattatgacacacaatttggaacagtccataaattatggttactatttttgtttgtt 343  Q
    ||||||||||| ||||||||||| |||||  |||| ||| |||  |||||||||||||    
T  9991025 gtattatgacaaacaatttggaatagtcccaaaataatgattatcatttttgtttgtt 9990968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 188 - 314
Target Start/End: Complemental strand, 16613476 - 16613348
Alignment:
Q  188 agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatga--atatacatgctcaa 285  Q
    ||||||||||||||||||| |||||||  ||||| ||||||||||||| |||| |||||||||||||||||||| || ||||||  |||||||| |||||    
T  16613476 agatcaaagtaccaagagaaggtgcaagcaatatggaaacaaagccacgtagtaggatgaaaagaccaagtagtgcggggatgattatatacattctcaa 16613377  T
Q  286 gtattatgacacacaatttggaacagtcc 314  Q
    ||||||||||||||||||||||| |||||    
T  16613376 gtattatgacacacaatttggaatagtcc 16613348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 38980940 - 38981097
Alignment:
Q  24 attcattccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatgg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38980940 attcattccatccttttaatttaatatatttctctttcttttgttgacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatgg 38981039  T
Q  124 tgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaat 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38981040 tgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaat 38981097  T

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Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 182 - 343
Target Start/End: Original strand, 38981138 - 38981299
Alignment:
Q  182 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 281  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38981138 caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccgcatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 38981237  T
Q  282 tcaagtattatgacacacaatttggaacagtccataaattatggttactatttttgtttgtt 343  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  38981238 tcaagtattatgacacacaatttggaacaatccataaataatggttaccatttttgtttgtt 38981299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 24867391 - 24867259
Alignment:
Q  52 tttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattc 151  Q
    |||||||||| ||| || ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||| ||||| |||     
T  24867391 tttctctttcatttatgtacattgagagtgtggtgtcaattgagacgatgaacacgtcttacattttgatggtgaactttatatttaactatttttattt 24867292  T
Q  152 atgtattgaagaatgctaggttttttgaatcaa 184  Q
    ||||||||||||| | ||||| | |||||||||    
T  24867291 atgtattgaagaacgataggtctcttgaatcaa 24867259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 24867207 - 24867137
Alignment:
Q  191 tcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagt 261  Q
    |||||| || || ||| |||||||| |||||   |||||||||| |||||||||||||||| |||||||||    
T  24867207 tcaaagaacaaaaagaaggtgcaaacaatatgagaacaaagccaaatagtgggatgaaaaggccaagtagt 24867137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 12383 - 12223
Alignment:
Q  24 attcattccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatgg 123  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12383 attcattccatccttttaatttaatatatatctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactctgatgg 12284  T
Q  124 tgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12283 tgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttcaatcaa 12223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 182 - 343
Target Start/End: Complemental strand, 12181 - 12020
Alignment:
Q  182 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 281  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12181 caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacatagttggatgaaaagaccaagtagtacgaggatgaatatacatgc 12082  T
Q  282 tcaagtattatgacacacaatttggaacagtccataaattatggttactatttttgtttgtt 343  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12081 tcaagtattattacacacaatttggaacagtccataaattatggttaccatttttgtttgtt 12020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 32 - 184
Target Start/End: Original strand, 13604 - 13756
Alignment:
Q  32 catccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactct 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13604 catccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaacttt 13703  T
Q  132 atatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13704 atatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 13756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 182 - 343
Target Start/End: Original strand, 13798 - 13959
Alignment:
Q  182 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 281  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  13798 caagaaagatcaaagtaccaagtgatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagacctagtagtacgagaatgaatatacatgc 13897  T
Q  282 tcaagtattatgacacacaatttggaacagtccataaattatggttactatttttgtttgtt 343  Q
      ||||||||||||||||||||||||| ||||  |||||||||||||| |||||||||||||    
T  13898 ggaagtattatgacacacaatttggaagagtctgtaaattatggttaccatttttgtttgtt 13959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 8212373 - 8212533
Alignment:
Q  24 attcattccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatgg 123  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8212373 attcattccatcctttaaatttaatatatttctctttcttttatggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatgg 8212472  T
Q  124 tgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 184  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8212473 tgaactctatatttaacaattttgattcatgtattgaataatgctaggttttttgaatcaa 8212533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 9290634 - 9290794
Alignment:
Q  24 attcattccatccttttaatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatgg 123  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9290634 attcattccatccttttaaattaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatattacactttgatgg 9290733  T
Q  124 tgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 184  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9290734 tgaactctatatttagcaattttgattcatgtattgaagaatgctaggttttttgaatcaa 9290794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 184 - 343
Target Start/End: Original strand, 9290838 - 9290997
Alignment:
Q  184 agaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgctc 283  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  9290838 agaaagatcaaagtaccaagagatggtgcaagcaatatagaaacaaagccacatagtgggatgaaaagatcaagtagtactaggatgaatatacatgctc 9290937  T
Q  284 aagtattatgacacacaatttggaacagtccataaattatggttactatttttgtttgtt 343  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  9290938 aagtattatgacacataatttggaacagtccataaattatggttaccatttttgtttgtt 9290997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 182 - 343
Target Start/End: Original strand, 8212575 - 8212735
Alignment:
Q  182 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 281  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  8212575 caagaaatatcaaagtaccaagagatggtgcaaaaaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggataaatat-catgc 8212673  T
Q  282 tcaagtattatgacacacaatttggaacagtccataaattatggttactatttttgtttgtt 343  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  8212674 ttaagtattatgacacacgatttggaacagtccataaattatggttaccatttttgtttgtt 8212735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 182 - 343
Target Start/End: Original strand, 51425028 - 51425189
Alignment:
Q  182 caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc 281  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |    
T  51425028 caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagatcaagtagtacaaggatgaatatacattc 51425127  T
Q  282 tcaagtattatgacacacaatttggaacagtccataaattatggttactatttttgtttgtt 343  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  51425128 tcaagtattatgacacacaatttggaaaagtccataaattatggttaccatttttgtttgtt 51425189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 51424827 - 51424986
Alignment:
Q  24 attcattccatcctttt-aatttaatatatttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatg 122  Q
    ||||||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  51424827 attcattccatcctttttaatttaatat--ttctatttcttttgtggacattgagagtgtggtgtcaattgagacgatgaacgcatcttacactttgatg 51424924  T
Q  123 gtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaa 184  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  51424925 gtgaactctatatttaacaagtttgattcatgaattgaagaatgctaggttttttgaatcaa 51424986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 24999465 - 24999573
Alignment:
Q  72 attgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctagg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||  ||||||||||| |||||||    
T  24999465 attgagagtgtggtgtcaattgagatgatgaacacatcttacactttgacgatgaactctatatttaacaattttgatttctgtattgaagagtgctagg 24999564  T
Q  172 ttttttgaa 180  Q
    ||| |||||    
T  24999565 tttcttgaa 24999573  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 24999629 - 24999678
Alignment:
Q  188 agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacat 237  Q
    ||||||||||||||||||| |||||||| ||||| |||| ||||||||||    
T  24999629 agatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat 24999678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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