View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_19 (Length: 349)
Name: NF13948_low_19
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 332
Target Start/End: Original strand, 55269675 - 55269999
Alignment:
| Q |
8 |
agaagcaaagggaaaaatgaacttacagttttccatccatctggatctaaaaaagaaacgacttttgtgttaaggccgggaattggccctggttgccgag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55269675 |
agaagcaaagggaaaaatgaacttacagttttccatccatctggatctaaaaaagaaacgacttttgtgttaaggccgggaattggccctggttgccgag |
55269774 |
T |
|
| Q |
108 |
tgatcttccctccaagctcttgcgttactaggttgactacatcagcactcttgtagacatcatcagtaccaacagcaatctgtcatagacacatgaaaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55269775 |
tgatcttccctccaagctcttgcgttactaggttgactacatcagcactcttgtagacatcatcagtaccaacagcaatctgtcatagacacatgaaaca |
55269874 |
T |
|
| Q |
208 |
tattttaccattaacaggacagagctgcgcagaaagctagtttaagcttcaaggtcaaataatttaacttatgaactaacctgtgcataagcagttccct |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
55269875 |
tattttaccattaacaggacagagctgcgcagaaagctagtttaagcttcaaggtcatataatttaacttatgaactaacctgtgcataagcagttccct |
55269974 |
T |
|
| Q |
308 |
tagagtattcggtgacaccataatt |
332 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
55269975 |
tagagtattcggtgacaccataatt |
55269999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 27 - 332
Target Start/End: Original strand, 55262830 - 55263135
Alignment:
| Q |
27 |
aacttacagttttccatccatctggatctaaaaaagaaacgacttttgtgttaaggccgggaattggccctggttgccgagtgatcttccctccaagctc |
126 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| |
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| T |
55262830 |
aacttacagttttccatccatctggatctaaaaaggaagtgacctttgtgttaaggccaggaattggccctggttgcagagtgatctcccctccaagctc |
55262929 |
T |
|
| Q |
127 |
ttgcgttactaggttgactacatcagcactcttgtagacatcatcagtaccaacagcaatctgtcatagacacatgaaacatattttaccattaacagga |
226 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || | | |
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| T |
55262930 |
ttgtgtgactaggttgactacatcagcactcttgtagacatcatcagtaccaatggcaatctgttatagacacatgaaacatattttaccatcaatggta |
55263029 |
T |
|
| Q |
227 |
cagagctgcgcagaaagctagtttaagcttcaaggtcaaataatttaacttatgaactaacctgtgcataagcagttcccttagagtattcggtgacacc |
326 |
Q |
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|| | || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263030 |
cataaacacgaagaaagctagtttaagcttcaaggtcatataatttaacttatgaactaacctgtgcataagcagttcccttagagtattcggtgacacc |
55263129 |
T |
|
| Q |
327 |
ataatt |
332 |
Q |
| |
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|||||| |
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| T |
55263130 |
ataatt |
55263135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 8300857 - 8301029
Alignment:
| Q |
27 |
aacttacagttttccatccatctggatctaaaaaagaaacgacttttgtgttaaggccgggaattggccctggttgccgagtgatcttccctccaagctc |
126 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| || |||||||| ||||| || |||||||||||||||| || ||||||||||||| || |
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| T |
8300857 |
aactcacagttttccatccatctggatctaagaaagaagtgatctttgtgttgaggccagggattggccctggttgcctggtaatcttccctccaaattc |
8300956 |
T |
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| Q |
127 |
ttgcgttactaggttgactacatcagcactcttgtagacatcatcagtaccaacagcaatctgtcatagacac |
199 |
Q |
| |
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||| || |||||||||||| || ||||||||||| |||||||| || |||||||||| |||| ||| |||| |
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|
| T |
8300957 |
ttgagtggctaggttgactaactcggcactcttgtatacatcatcggtgccaacagcaacctgttatatacac |
8301029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 8301107 - 8301155
Alignment:
| Q |
281 |
aactaacctgtgcataagcagttcccttagagtattcggtgacaccata |
329 |
Q |
| |
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|||||||||||||||||||| ||||||| | |||||| ||||||||||| |
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| T |
8301107 |
aactaacctgtgcataagcatttcccttggtgtattcagtgacaccata |
8301155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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