View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_2 (Length: 783)
Name: NF13948_low_2
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 688; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 19 - 766
Target Start/End: Complemental strand, 3592409 - 3591662
Alignment:
| Q |
19 |
acctcatccatatgatcctattcagctcatttagactatttcttgtgcaagaagtgcaatctcaatttcctgcagtgacttcccttttgtttccagaaca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592409 |
acctcatccatatgatcctattcagctcatttagactatttcttgtgcaagaagtgcaatctcaatttcctgcagtgacttcccttttgtttccagaaca |
3592310 |
T |
|
| Q |
119 |
tatttcttcacaaaaatcacagctaacaaagaaaatgaaccaaaaatactatacaagagttgtgctcccatttgttccagcatgcgcaaaaataatagcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592309 |
tatttcttcacaaaaatcacagctaacaaagaaaatgaaccaaaaatactatacaagagttgtgctcccatttgttccagcatgcgcaaaaataatagcc |
3592210 |
T |
|
| Q |
219 |
ccacaaagaagtttatcacctgttnnnnnnnntgttaacgaaaagagccaaatgaaaatgacattgataaacctggaatgccaaaacttatttttcaagc |
318 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592209 |
ccacaaagaagtttatcacctgttaaaaaaaatgttaacgaaaagagccaaatgaaaatgacattgataaacctggaatgccaaaacttatttttcaagc |
3592110 |
T |
|
| Q |
319 |
acgtaaaatttatttgatgcaactgaatattacatcaagagaggagatttcaagtaattctaactactgaaaaatcagaactcaaattgcaattcatact |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592109 |
acgtaaaatttatttgatgcaactgaatattacatcaagagaagagatttcaagtaattctaactactgaaaaatcagaactcaaattgcaattcatact |
3592010 |
T |
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| Q |
419 |
ttgcggtcgggacgttgacattgacaccaaacatgacactaacacatatacaccataataattaaggaaatgtaagtgattaaggaagttgtaaacacat |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592009 |
ttgcggtcgggacgttgacattgacaccaaacatgacactaacacatatacaacataataattaaggaaatgtaagtgattaaggaagttgtaaacacat |
3591910 |
T |
|
| Q |
519 |
gcgtcggtgtcatatcagtgtcggacaccagacacactttcaatttgaagtgttggtgctacgtaaaaaatatgttaaaatatctagaaagtatctcatg |
618 |
Q |
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| T |
3591909 |
gtgtcggtgtcatatcagtgtcggacaccagacacactttcaatttgaagtgttggtgctacgtaaaaaatatgttaaaatatctagaaagtatctcatg |
3591810 |
T |
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| Q |
619 |
ttctttcataaatatgttggattatctcttataactgatttccataaaaaccatgannnnnnnnccttatttaattaaaagaagtctaatatttagcata |
718 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3591809 |
ttctttcataaatatgttggattatctcttataactgatttccataaaaaccatgattttttttccttatttaattaaaagaagtctaatatttagcata |
3591710 |
T |
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| Q |
719 |
aatgaggatttttactttgtcttacataaagatacattatatcattca |
766 |
Q |
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| T |
3591709 |
aatgaggatttttactttgtcttacataaagatacattatatcattca |
3591662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 536 - 579
Target Start/End: Complemental strand, 14762913 - 14762870
Alignment:
| Q |
536 |
gtgtcggacaccagacacactttcaatttgaagtgttggtgcta |
579 |
Q |
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| T |
14762913 |
gtgtcggacaccagacacgccttcaatttgaagtgttggtgcta |
14762870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 571
Target Start/End: Complemental strand, 44743979 - 44743946
Alignment:
| Q |
538 |
gtcggacaccagacacactttcaatttgaagtgt |
571 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
44743979 |
gtcggacaccagacacactttcaattcgaagtgt |
44743946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 577
Target Start/End: Complemental strand, 19567730 - 19567681
Alignment:
| Q |
528 |
tcatatcagtgtcggacaccagacacactttcaatttgaagtgttggtgc |
577 |
Q |
| |
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|||||||||||||||| | |||| ||||||||||| |||||||| ||||| |
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| T |
19567730 |
tcatatcagtgtcggatatcagaaacactttcaatatgaagtgtcggtgc |
19567681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 578
Target Start/End: Complemental strand, 14314581 - 14314548
Alignment:
| Q |
545 |
accagacacactttcaatttgaagtgttggtgct |
578 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
14314581 |
accagacacactttcgatttgaagtgttggtgct |
14314548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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