View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13948_low_20 (Length: 347)

Name: NF13948_low_20
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13948_low_20
NF13948_low_20
[»] chr2 (5 HSPs)
chr2 (4-330)||(9163820-9164146)
chr2 (159-318)||(9151156-9151313)
chr2 (167-237)||(2511136-2511206)
chr2 (168-250)||(17257050-17257132)
chr2 (167-231)||(12942412-12942476)
[»] chr1 (15 HSPs)
chr1 (168-243)||(11229081-11229156)
chr1 (166-245)||(31686686-31686765)
chr1 (174-253)||(38941155-38941234)
chr1 (176-240)||(25101900-25101964)
chr1 (181-241)||(34993662-34993722)
chr1 (165-223)||(1584915-1584973)
chr1 (161-241)||(27202537-27202615)
chr1 (167-242)||(468209-468285)
chr1 (159-215)||(10323871-10323927)
chr1 (167-215)||(33763692-33763740)
chr1 (181-225)||(34987188-34987232)
chr1 (168-253)||(11229300-11229386)
chr1 (174-250)||(5846901-5846977)
chr1 (167-225)||(25631514-25631572)
chr1 (175-222)||(25102116-25102166)
[»] chr5 (12 HSPs)
chr5 (167-245)||(27803053-27803131)
chr5 (165-245)||(3719103-3719183)
chr5 (160-244)||(41978327-41978411)
chr5 (166-253)||(16850943-16851030)
chr5 (160-225)||(8483860-8483925)
chr5 (181-245)||(16265313-16265377)
chr5 (165-209)||(16585346-16585390)
chr5 (173-233)||(39055535-39055595)
chr5 (166-225)||(5324504-5324563)
chr5 (168-234)||(16585110-16585176)
chr5 (167-221)||(4597435-4597490)
chr5 (167-243)||(20497231-20497308)
[»] chr7 (8 HSPs)
chr7 (168-233)||(48996777-48996842)
chr7 (169-231)||(48411256-48411318)
chr7 (165-222)||(30187457-30187515)
chr7 (173-247)||(44000351-44000425)
chr7 (166-233)||(28021537-28021603)
chr7 (168-238)||(39681764-39681834)
chr7 (168-208)||(30187703-30187743)
chr7 (203-243)||(41442254-41442294)
[»] chr3 (7 HSPs)
chr3 (167-238)||(39963061-39963132)
chr3 (166-224)||(39789527-39789585)
chr3 (178-245)||(50084754-50084821)
chr3 (167-237)||(37772620-37772690)
chr3 (172-225)||(6720487-6720540)
chr3 (165-214)||(28525590-28525639)
chr3 (187-250)||(54966192-54966253)
[»] chr8 (6 HSPs)
chr8 (165-225)||(40641166-40641226)
chr8 (169-222)||(30897423-30897476)
chr8 (172-245)||(7620139-7620214)
chr8 (159-225)||(15118805-15118865)
chr8 (160-197)||(15118616-15118653)
chr8 (169-225)||(31344464-31344520)
[»] chr6 (2 HSPs)
chr6 (175-234)||(24985403-24985462)
chr6 (167-234)||(19371877-19371946)
[»] chr4 (1 HSPs)
chr4 (168-225)||(14467021-14467079)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 4 - 330
Target Start/End: Original strand, 9163820 - 9164146
Alignment:
Q  4 gaatcataatatgaaggatgtcacaatatttggttctcaagactggaaagtgctcccatgttaaatcaggagaattgttgtccaaatcatttcaaaaaac 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9163820 gaatcataatatgaaggatgtcacaatatttggttctcaagactggaaagtgctaccatgttaaatcaggagaattgttgtccaaatcatttcaaaaaac 9163919  T
Q  104 aatatcccaacaaagcagcatggcctttggttttnnnnnnntctgctttctaaggaagggtccgtttactttgtgaaaacattttctattttcacttcct 203  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9163920 aatatcccaacaaagcagcatggcctttggttttaaagaaatctgctttctaaggaagggtccgtttactttgtgaaaacattttctattttcacttcct 9164019  T
Q  204 aaaatttgtgttagttttacttattaacaaggagaaaagagatttttaaattaagtcatatagatcgtgagaagataaagtgctagctaggaattatgcg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9164020 aaaatttgtgttagttttacttattaacaaggagaaaagagatttttaaattaagtcatatagatcgtgagaagataaagtgctagctaggaattatgcg 9164119  T
Q  304 tttcatgaaataatgaacctagctctt 330  Q
    |||||||||||||||||||||||||||    
T  9164120 tttcatgaaataatgaacctagctctt 9164146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 159 - 318
Target Start/End: Original strand, 9151156 - 9151313
Alignment:
Q  159 aagggtccgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagagatttttaaattaag 258  Q
    |||| ||| ||||||||||||||||||||||| || ||| |||||||||||  |||||||||||||||||||||| |||| |||||||| ||||| | ||    
T  9151156 aaggatccatttactttgtgaaaacattttctgttatcatttcctaaaatt--tgttagttttacttattaacaatgagagaagagattcttaaagtgag 9151253  T
Q  259 tcatatagatcgtgagaagataaagtgctagctaggaattatgcgtttcatgaaataatg 318  Q
    ||||   ||  |  ||||||| ||||||||||||||||| ||| |||||| |||||||||    
T  9151254 tcattgtgacagaaagaagatcaagtgctagctaggaatgatgtgtttcaggaaataatg 9151313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 2511136 - 2511206
Alignment:
Q  167 gtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggag 237  Q
    ||||||||| |||||||||||||| |||||| || ||||| ||| ||||| |||||||| |||||||||||    
T  2511136 gtttactttatgaaaacattttctgttttcattttctaaattttttgttaattttacttgttaacaaggag 2511206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 17257132 - 17257050
Alignment:
Q  168 tttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagagattttt 250  Q
    |||| ||||| | ||||| ||||||||||| || |||||||||||||||||| ||||||||||  ||||||||| | ||||||    
T  17257132 tttaatttgtaagaacatcttctattttcattttctaaaatttgtgttagttatacttattaattaggagaaaatacattttt 17257050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 12942412 - 12942476
Alignment:
Q  167 gtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaac 231  Q
    ||||||| | ||||||||||||||||||||| ||  |||||||||||||| ||||| || |||||    
T  12942412 gtttactatatgaaaacattttctattttcatttattaaaatttgtgttaattttatttgttaac 12942476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 11229081 - 11229156
Alignment:
Q  168 tttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaaga 243  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || || ||||||||||||||    
T  11229081 tttactttgtgaaaacattttctattttcatttcctaaaatttgtgttagttttatttgtttacaaggagaaaaga 11229156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 31686686 - 31686765
Alignment:
Q  166 cgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagaga 245  Q
    ||||||||||||||||||||||||||||||    ||| |||||||||||||||||||||| |||||||||||||||||||    
T  31686686 cgtttactttgtgaaaacattttctatttttttctcccaaaatttgtgttagttttacttgttaacaaggagaaaagaga 31686765  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 38941155 - 38941234
Alignment:
Q  174 ttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagagatttttaaa 253  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||  ||| ||||||||||||||| ||| |||||||    
T  38941155 ttgtgaaaacattttctattttcatttcctaaaatatgtgttagtttaccttgttaacaaggagaaaatagacttttaaa 38941234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 25101900 - 25101964
Alignment:
Q  176 gtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaa 240  Q
    |||| ||||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||    
T  25101900 gtgataacattttctattttcatttcttaaaatttgtgtaagttttacttcttaacaaggagaaa 25101964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 34993722 - 34993662
Alignment:
Q  181 aacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaa 241  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||    
T  34993722 aacattttctattttcatttcctaaaatttgtgttggttttacttgttaacaaggacaaaa 34993662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 1584915 - 1584973
Alignment:
Q  165 ccgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttac 223  Q
    |||| ||||| ||||||||||||||||| ||||||| || |||||||||||||||||||    
T  1584915 ccgtgtacttagtgaaaacattttctatattcactttcttaaatttgtgttagttttac 1584973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 27202615 - 27202537
Alignment:
Q  161 gggtccgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaa 241  Q
    ||||| ||||||||||||||  ||||| ||||||| | |||||||||||| |||||||| || || |||||||||||||||    
T  27202615 gggtctgtttactttgtgaa--catttcctatttttatttcctaaaatttatgttagttataattgttaacaaggagaaaa 27202537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 468209 - 468285
Alignment:
Q  167 gtttactttgtgaaaa-cattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaag 242  Q
    |||||||||||||||| | |||| |||||||| ||| ||||||||||||||||||| ||| |||| ||||| |||||    
T  468209 gtttactttgtgaaaaactttttttattttcatttcttaaaatttgtgttagttttgcttgttaataaggaaaaaag 468285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 10323927 - 10323871
Alignment:
Q  159 aagggtccgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgtt 215  Q
    ||||| |||||||||||||||||| ||| |||||||||| |||||||| ||||||||    
T  10323927 aagggcccgtttactttgtgaaaatattgtctattttcatttcctaaagtttgtgtt 10323871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 33763740 - 33763692
Alignment:
Q  167 gtttactttgtgaaaacattttctattttcacttcctaaaatttgtgtt 215  Q
    ||||||||||||||||||||||||||||| | ||| |||||||||||||    
T  33763740 gtttactttgtgaaaacattttctatttttatttcttaaaatttgtgtt 33763692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 34987232 - 34987188
Alignment:
Q  181 aacattttctattttcacttcctaaaatttgtgttagttttactt 225  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||    
T  34987232 aacattttctattttcatttcctaaaatttgtgttatttttactt 34987188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 11229386 - 11229300
Alignment:
Q  168 tttactttgtgaaaacatt-ttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagagatttttaaa 253  Q
    ||||||||||||||||||| || | |||||| |||  ||||||||| |||||||||||| || ||| | |||||| |||||||||||    
T  11229386 tttactttgtgaaaacattattttgttttcatttctcaaaatttgttttagttttacttgttgacaggaagaaaatagatttttaaa 11229300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 5846901 - 5846977
Alignment:
Q  174 ttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagagattttt 250  Q
    ||||||||| ||||  |||||||| ||  |||||||| ||| ||||||||||||||||||  |||||||||| ||||    
T  5846901 ttgtgaaaatatttcttattttcatttgttaaaatttatgtaagttttacttattaacaattagaaaagagactttt 5846977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 25631514 - 25631572
Alignment:
Q  167 gtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttactt 225  Q
    ||||||||||||||||| | || |||||||| || ||||||||||| ||| ||||||||    
T  25631514 gtttactttgtgaaaacgtattatattttcattttctaaaatttgttttaattttactt 25631572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 25102166 - 25102116
Alignment:
Q  175 tgtgaaaacattttctattttcacttcc---taaaatttgtgttagtttta 222  Q
    |||||||||||||| |||||||| ||||   ||||||||||||||||||||    
T  25102166 tgtgaaaacattttttattttcatttcccaataaaatttgtgttagtttta 25102116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 27803131 - 27803053
Alignment:
Q  167 gtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagaga 245  Q
    ||||||||||| |||| |||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  27803131 gtttactttgtaaaaatattttctattttcatttcctaaaacttgtgttagttttacttgttaacaaggagaaaagaga 27803053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 3719103 - 3719183
Alignment:
Q  165 ccgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagaga 245  Q
    ||||||||||||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  3719103 ccgtttactttgtgaaatcatgttctgttttcatttcctaaaatttgtgttagttttacttattaacaaggaaaaaggaga 3719183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 41978411 - 41978327
Alignment:
Q  160 agggtccgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagag 244  Q
    ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||  |||||||| ||| |||| ||| |||||    
T  41978411 agggttcgtttactttgttaaaacattttctattttcatttcctaaaatttgtgttgtttttacttgttagcaagaagataagag 41978327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 16851030 - 16850943
Alignment:
Q  166 cgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagagatttttaaa 253  Q
    |||||||||||||||||| |||||||||| || ||  |||||||||  |||||||||||| |||||||||| |||| ||| |||||||    
T  16851030 cgtttactttgtgaaaactttttctatttccattttataaaatttgcattagttttacttgttaacaaggataaaatagacttttaaa 16850943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 8483860 - 8483925
Alignment:
Q  160 agggtccgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttactt 225  Q
    |||||| |||||||| |||||||||||||||||||| | || || |||||||||||| ||||||||    
T  8483860 agggtctgtttacttcgtgaaaacattttctatttttattttcttaaatttgtgttaattttactt 8483925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 16265313 - 16265377
Alignment:
Q  181 aacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagaga 245  Q
    ||||||||||||||||| || |||||| ||| ||| ||||||||| |||||||| ||||||||||    
T  16265313 aacattttctattttcagttgctaaaacttgcgttggttttacttgttaacaagtagaaaagaga 16265377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 16585390 - 16585346
Alignment:
Q  165 ccgtttactttgtgaaaacattttctattttcacttcctaaaatt 209  Q
    |||||||||||||||||||||||| |||||||| |||||||||||    
T  16585390 ccgtttactttgtgaaaacattttttattttcatttcctaaaatt 16585346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 39055535 - 39055595
Alignment:
Q  173 tttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaa 233  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||| ||||| || |||||||    
T  39055535 tttgtgaaagcattttctattttcatttcttaaaatttgtgttaattttaattgttaacaa 39055595  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 5324504 - 5324563
Alignment:
Q  166 cgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttactt 225  Q
    ||||||||||| |||||||||||||  ||||| |||||||||||| ||| ||||||||||    
T  5324504 cgtttactttgggaaaacattttctcatttcatttcctaaaatttatgtcagttttactt 5324563  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 16585110 - 16585176
Alignment:
Q  168 tttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaag 234  Q
    |||||||||||||| |||| |||||||||| ||||||||| ||||| || ||||||||  |||||||    
T  16585110 tttactttgtgaaatcattctctattttcatttcctaaaacttgtgataattttacttgataacaag 16585176  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 4597435 - 4597490
Alignment:
Q  167 gtttactttgtgaaaa-cattttctattttcacttcctaaaatttgtgttagtttt 221  Q
    |||||||||||||||| ||||||||||||||  || ||||||||||||||| ||||    
T  4597435 gtttactttgtgaaaaacattttctattttctttttctaaaatttgtgttaatttt 4597490  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 20497231 - 20497308
Alignment:
Q  167 gtttactttgtgaaaacattttctattttcacttcctaaaatttgtgtt-agttttacttattaacaaggagaaaaga 243  Q
    |||||||||||||||| ||||| |||||| | ||| ||||| ||||||| ||||||||| ||||| || |||| ||||    
T  20497231 gtttactttgtgaaaatattttttattttgatttcttaaaagttgtgttaagttttactaattaaaaatgagagaaga 20497308  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 48996777 - 48996842
Alignment:
Q  168 tttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaa 233  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||    
T  48996777 tttactttatgaaaacattttctattttcatttcataaaatttgtgttagttttacttgttaacaa 48996842  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 48411256 - 48411318
Alignment:
Q  169 ttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaac 231  Q
    ||||||||||||||||||||||||||||| ||  ||||||||| ||||||||||||| |||||    
T  48411256 ttactttgtgaaaacattttctattttcattttttaaaatttgagttagttttacttgttaac 48411318  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 30187457 - 30187515
Alignment:
Q  165 ccgtttactttgtgaaaacatttt-ctattttcacttcctaaaatttgtgttagtttta 222  Q
    |||||||||||||||||||||||| ||||||||| || || ||||||||||||||||||    
T  30187457 ccgtttactttgtgaaaacatttttctattttcattttctgaaatttgtgttagtttta 30187515  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 44000425 - 44000351
Alignment:
Q  173 tttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagagatt 247  Q
    |||||||| | |||||| || |||| ||||||||||| |||||||||||| || ||||||| |||||| ||||||    
T  44000425 tttgtgaagatattttcaatattcatttcctaaaattagtgttagttttaatttttaacaatgagaaaggagatt 44000351  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 28021603 - 28021537
Alignment:
Q  166 cgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaa 233  Q
    |||||||||| ||||||| |||| || ||||| ||  ||||||||||||||||||||||| |||||||    
T  28021603 cgtttactttatgaaaactttttttaatttcatttt-taaaatttgtgttagttttacttgttaacaa 28021537  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 39681764 - 39681834
Alignment:
Q  168 tttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggaga 238  Q
    |||||||||||||||||||||||||||| | |||  |||||||| | || ||||||||  |||||| ||||    
T  39681764 tttactttgtgaaaacattttctatttttatttctgaaaatttgagctaattttacttgctaacaaagaga 39681834  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 30187743 - 30187703
Alignment:
Q  168 tttactttgtgaaaacattttctattttcacttcctaaaat 208  Q
    |||||||| ||||||||||||||||||||  ||||||||||    
T  30187743 tttactttatgaaaacattttctattttcctttcctaaaat 30187703  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 41442254 - 41442294
Alignment:
Q  203 taaaatttgtgttagttttacttattaacaaggagaaaaga 243  Q
    |||||| ||||||||||||| || |||||||||||||||||    
T  41442254 taaaatatgtgttagttttatttgttaacaaggagaaaaga 41442294  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 39963061 - 39963132
Alignment:
Q  167 gtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggaga 238  Q
    |||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||  | |||||||||    
T  39963061 gtttactttgtgaaaacattttttattttgatttcctaaaatttgtgttagttttacttgctgacaaggaga 39963132  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 39789585 - 39789527
Alignment:
Q  166 cgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttact 224  Q
    ||||||||||||||||| |||||||||||||| | |||||||||||||||| |||||||    
T  39789585 cgtttactttgtgaaaatattttctattttcattgcctaaaatttgtgttaattttact 39789527  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 50084754 - 50084821
Alignment:
Q  178 gaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagaga 245  Q
    |||||||||||||||||  | |||||||||||||| ||| |||||||| |||||||||||||| ||||    
T  50084754 gaaaacattttctatttctatttcctaaaatttgtattaattttacttgttaacaaggagaaaggaga 50084821  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 37772620 - 37772690
Alignment:
Q  167 gtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaaggag 237  Q
    |||||||||||||  ||||||||| |||||| ||||| |||||||||||| ||||||||  ||||||||||    
T  37772620 gtttactttgtgattacattttctgttttcatttcctgaaatttgtgttaattttacttgctaacaaggag 37772690  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 6720540 - 6720487
Alignment:
Q  172 ctttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttactt 225  Q
    |||||| |||||||||| ||||||||  | ||||||||||||||| ||||||||    
T  6720540 ctttgtaaaaacattttatattttcatattctaaaatttgtgttaattttactt 6720487  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 28525639 - 28525590
Alignment:
Q  165 ccgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgt 214  Q
    ||||||||||||| |||| |||||||| ||||| ||| ||||||||||||    
T  28525639 ccgtttactttgtaaaaatattttctagtttcatttcttaaaatttgtgt 28525590  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 54966192 - 54966253
Alignment:
Q  187 ttctattttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagagattttt 250  Q
    ||||||||||| |||||||||||  |||||||| || || |||||||| |||||| ||||||||    
T  54966192 ttctattttcatttcctaaaatt--tgttagttgtatttcttaacaagaagaaaatagattttt 54966253  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 40641226 - 40641166
Alignment:
Q  165 ccgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttactt 225  Q
    ||||||| |||| |||||||||||||||||||| || ||||||||||||||| ||||||||    
T  40641226 ccgtttattttgcgaaaacattttctattttcattttctaaaatttgtgttaattttactt 40641166  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 30897476 - 30897423
Alignment:
Q  169 ttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagtttta 222  Q
    |||||| ||||||||||||||||||||||||||| || |||||||||| |||||    
T  30897476 ttacttggtgaaaacattttctattttcacttcccaacatttgtgttaatttta 30897423  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 7620214 - 7620139
Alignment:
Q  172 ctttgtgaaaacattttct--attttcacttcctaaaatttgtgttagttttacttattaacaaggagaaaagaga 245  Q
    ||||||||||| |||||||  ||||| | || || |||| | |||||||||||||| |||||||||||||||||||    
T  7620214 ctttgtgaaaatattttctttatttttatttacttaaatatatgttagttttacttgttaacaaggagaaaagaga 7620139  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 15118865 - 15118805
Alignment:
Q  159 aagggtccgtttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttactt 225  Q
    ||||| ||||||||||||||||||||| |||||||||      ||||||||||||||| ||||||||    
T  15118865 aagggcccgtttactttgtgaaaacatattctatttt------ctaaaatttgtgttaattttactt 15118805  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 15118616 - 15118653
Alignment:
Q  160 agggtccgtttactttgtgaaaacattttctattttca 197  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  15118616 agggtccgtttactttgtgaaaacattttgtgttttca 15118653  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 31344520 - 31344464
Alignment:
Q  169 ttactttgtgaaaacattttctattttcacttcctaaaatttgtgttagttttactt 225  Q
    ||||||||||||| | |||| |||||||| || ||||| ||||||||| ||||||||    
T  31344520 ttactttgtgaaagcgttttttattttcattttctaaagtttgtgttaattttactt 31344464  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 24985403 - 24985462
Alignment:
Q  175 tgtgaaaacattttctattttcacttcctaaaatttgtgttagttttacttattaacaag 234  Q
    ||||| |||||||  |||||||| |||||||||||||| |||||||||||| ||||||||    
T  24985403 tgtgacaacatttattattttcatttcctaaaatttgtattagttttactttttaacaag 24985462  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 19371946 - 19371877
Alignment:
Q  167 gtttactttgtgaaaacattttctattttcac--ttcctaaaatttgtgttagttttacttattaacaag 234  Q
    ||||||||||||||||||| |||||||||  |  || ||||||||||||||| |||||||| ||||||||    
T  19371946 gtttactttgtgaaaacatattctattttttcggtttctaaaatttgtgttaattttacttgttaacaag 19371877  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 14467021 - 14467079
Alignment:
Q  168 tttactttgtgaaaacatttt-ctattttcacttcctaaaatttgtgttagttttactt 225  Q
    |||||||||||||  |||||| | ||||||| |||||||||||||||||| ||||||||    
T  14467021 tttactttgtgaattcatttttcgattttcatttcctaaaatttgtgttaattttactt 14467079  T

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