View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_22 (Length: 321)
Name: NF13948_low_22
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 44576761 - 44576469
Alignment:
| Q |
11 |
cacagatcacaattccacaaaaccaaaccaagtttgcatttacatctttaatttcctttaggtccttcaaatgtcttctaatggaaactaaacacaataa |
110 |
Q |
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| T |
44576761 |
cacaaatcacaatgccacaaaaccaaaccaaggttgcatttacatctttaatttcctttaggtccttcaaatgtcttctaatggaaactaaacacaataa |
44576662 |
T |
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| Q |
111 |
gttctaaaacataacacaacgcagtacggattatagatagggacgcaaagggcagtttgcaacctttgttctaaaatttcgactcgttgatccatagaag |
210 |
Q |
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| T |
44576661 |
gttctaaaacataacacaatgcagtacggattatagatagggacgcaaagggcagtttgcaacctttattctaaaatttcgactcgttgatccatagaag |
44576562 |
T |
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| Q |
211 |
gcctcattcatgtatcccctttctctagtactagacattcacaaaatatcccaacattacaattgcaaagggactacactatcatgttccagg |
303 |
Q |
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| T |
44576561 |
gcctcattcatgtatcccctttctctagtacaagacattcacaaaatatcccaacattacaattgcaaagggactacactatcatgttccagg |
44576469 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 18315910 - 18315853
Alignment:
| Q |
28 |
caaaaccaaaccaagtttgcatttacatctttaatttcctttaggtccttcaaatgtc |
85 |
Q |
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| T |
18315910 |
caaaaccaaatcaaagttgcattaacatctttaattccctttaggtccttcaaatgtc |
18315853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 297
Target Start/End: Complemental strand, 1508836 - 1508739
Alignment:
| Q |
200 |
atccatagaaggcctcattcatgtatcccctttctctagtactagacattcacaaaatatcccaacattacaattgcaaagggactacactatcatgt |
297 |
Q |
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| T |
1508836 |
atccataaaatgccttgttcatgtatccctcttctctaatacaagatactcaaaaaaaatcctaacaacacaattgcaaagggactactctatcatgt |
1508739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 296
Target Start/End: Complemental strand, 12122523 - 12122485
Alignment:
| Q |
258 |
atcccaacattacaattgcaaagggactacactatcatg |
296 |
Q |
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| T |
12122523 |
atcccaacagtacaattgcaaagggactacattatcatg |
12122485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 556893 - 556962
Alignment:
| Q |
18 |
cacaattccacaaaaccaaaccaagtttgcatttacatctttaatttcctttaggtccttcaaatgtctt |
87 |
Q |
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| T |
556893 |
cacaattcggcaaacccaaaccaaagttttatttacatcttcaattcccttcaggtccttcaaatgtctt |
556962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 655837 - 655902
Alignment:
| Q |
16 |
atcacaattccacaaaaccaaaccaagtttgcatttacatctttaatttcctttaggtccttcaaa |
81 |
Q |
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| T |
655837 |
atcacaattcaacaaaagcacaccaaagttgaatttacgtctttaattctctttaggtccttcaaa |
655902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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