View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_24 (Length: 305)
Name: NF13948_low_24
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 37916579 - 37916880
Alignment:
| Q |
1 |
tcggctgggatataactggtatcaaaagaggttcctcttcaacaggaacttgtttattctcttgttccacatgtgcatgttcatatatgtcaccataacc |
100 |
Q |
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| T |
37916579 |
tcggctgggatataactggtatcaaaagaggttcctcttcaacaggaacttgtttattctcttgttccacatgtgcatgttcatatatgtcaccataacc |
37916678 |
T |
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| Q |
101 |
tgatcattcactgtggcttgaatctgcgccactaaatcatgtgt-------------gttgctactgattcaatttgcttttatgtgcctacttcaacct |
187 |
Q |
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| T |
37916679 |
tgatcattcactgtggcttgaatctgcgccactaaatcatgtgtgttgtcaacatgagttgctactgattcaatttgcttttatgtgcctacttcaacct |
37916778 |
T |
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| Q |
188 |
ccttctcatgaggtatatattgttgtgttacnnnnnnngtgtcagcaagctgattatttgttgacttctttccttaatcaaaatttttcattggtttctt |
287 |
Q |
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| T |
37916779 |
ccttctcatgaggtatatattgttgtgttactttttttgtgtcagcaagctgattatttgttggcttcattccttaatcaaaatttttcattggtttctt |
37916878 |
T |
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| Q |
288 |
tg |
289 |
Q |
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|| |
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| T |
37916879 |
tg |
37916880 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 28595171 - 28595228
Alignment:
| Q |
161 |
tttgcttttatgtgcctacttcaacctccttctcatgaggtatatattgttgtgttac |
218 |
Q |
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|||||||| |||| || ||||||||||| |||||| ||||||||||||| |||||||| |
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| T |
28595171 |
tttgctttgatgtcccgacttcaacctctttctcacgaggtatatattgatgtgttac |
28595228 |
T |
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