View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_28 (Length: 269)
Name: NF13948_low_28
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 1716634 - 1716830
Alignment:
| Q |
21 |
aagatgtcaagggtatactaccagatctacatattttcattcatgaaattatcaatgactcatttctaaaataaagctccttttatttatttttgtatag |
120 |
Q |
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| T |
1716634 |
aagatgtcaagggtacactactagatctacatattgtcattcatgaaattatcattgactcatttctgaaataaagctccttttatttatttttgtatag |
1716733 |
T |
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| Q |
121 |
ttattattatagtttgccttacataaccaacatgattgcac--nnnnnnnnnnnnnnaaacatgagtgcacttgaaacttcaacgacattattttat |
215 |
Q |
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| T |
1716734 |
ttattattatagcttgccttacataaccaacatgattgcactttttatttttttttaaaacatgagtgcacttgaaacttcaacgacattattttat |
1716830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 265
Target Start/End: Original strand, 1738050 - 1738274
Alignment:
| Q |
37 |
actaccagatctacatattttcattcatgaaattatcaatgactcatttctaaaataaagctccttttatttatttttgtatagttattattatagtttg |
136 |
Q |
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| T |
1738050 |
actactagatctacatactgccattcatgaaattaccaatgactcatttctaaaagaaagctccttttatttatttttg------------tttagtttg |
1738137 |
T |
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| Q |
137 |
ccttacataaccaacatgattgcac--nnnnnnnnnnnnnnaaacatgagtgcacttgaaacttcaacgacattattttatt------gattgataacta |
228 |
Q |
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| T |
1738138 |
acttacataaccaacatgagtgcacttattttattttttacaaacatgagtgcacttgaaacttcaacggcattattttagtgatggagattgataacta |
1738237 |
T |
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| Q |
229 |
tatatataaccacttcatttccccgcctttgctactc |
265 |
Q |
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| T |
1738238 |
tatatatatgcacttcttttccctgcctttgctactc |
1738274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 1716828 - 1716860
Alignment:
| Q |
229 |
tatatataaccacttcatttccccgcctttgct |
261 |
Q |
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| T |
1716828 |
tatatataagcacttcatttccccgcctttgct |
1716860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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