View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_29 (Length: 263)
Name: NF13948_low_29
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 51145342 - 51145571
Alignment:
| Q |
19 |
tatgacactagtgggaaaaaactcgatgacattcgtggagacatagagctcagggatgtttgctttagttatcctacaagaccagatgaactgatattca |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51145342 |
tatgacactagtgggaaaaaacttgatgacattcgtggagacatagagctcagggatgtttgctttagttatcctacaagaccagatgaactgatattca |
51145441 |
T |
|
| Q |
119 |
atggattttctctttcattaccaagcggcactactgcagctttggtagggcaaagtgggagtggtaaatccacagttgttagtttgatagagagatttta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |
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| T |
51145442 |
atggattttctctttcattaccaagcggcactactgcagctttggtagggcaaagtggaagtgggaaatccacagttgttagtttgatagagagattcta |
51145541 |
T |
|
| Q |
219 |
tgatccaactgacggtgaaattctcattga |
248 |
Q |
| |
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||||||||| || |||||| |||||||||| |
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| T |
51145542 |
tgatccaacagatggtgaagttctcattga |
51145571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 51156483 - 51156712
Alignment:
| Q |
19 |
tatgacactagtgggaaaaaactcgatgacattcgtggagacatagagctcagggatgtttgctttagttatcctacaagaccagatgaactgatattca |
118 |
Q |
| |
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||||||||||||||| ||| || |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51156483 |
tatgacactagtgggcgaaagcttgatgacattcatggagacatagagctcaagaatgtttgctttagttatcctacaagaccagatgaactgatattca |
51156582 |
T |
|
| Q |
119 |
atggattttctctttcattaccaagcggcactactgcagctttggtagggcaaagtgggagtggtaaatccacagttgttagtttgatagagagatttta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |
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| T |
51156583 |
atggattttctctttcattaccaagcggcactactgcagctttggtagggcaaagtggaagtgggaaatccacagttgttagtttgatagagagattcta |
51156682 |
T |
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| Q |
219 |
tgatccaactgacggtgaaattctcattga |
248 |
Q |
| |
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||||||||| || |||||| |||||||||| |
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| T |
51156683 |
tgatccaacagatggtgaagttctcattga |
51156712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 43 - 225
Target Start/End: Original strand, 51199355 - 51199537
Alignment:
| Q |
43 |
gatgacattcgtggagacatagagctcagggatgtttgctttagttatcctacaagaccagatgaactgatattcaatggattttctctttcattaccaa |
142 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
51199355 |
gatgacattcgtggagacatagagcttagggaggtttgctttagttatcctacaagaccagatgaactgatattcaatggattttctctaacaataccaa |
51199454 |
T |
|
| Q |
143 |
gcggcactactgcagctttggtagggcaaagtgggagtggtaaatccacagttgttagtttgatagagagattttatgatcca |
225 |
Q |
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| || ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51199455 |
gtgggactactgtagctttggtagggcaaagtgggagtggaaaatccacagttgtcagtttgatagagagattttatgatcca |
51199537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 29937586 - 29937357
Alignment:
| Q |
19 |
tatgacactagtgggaaaaaactcgatgacattcgtggagacatagagctcagggatgtttgctttagttatcctacaagaccagatgaactgatattca |
118 |
Q |
| |
|
||||| |||| ||||| ||| || ||||| ||||| |||||||||||||| | || || ||||||||||||||||||||||||||||||||||||||| |
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| T |
29937586 |
tatgaaactactgggagaaagcttgatgatattcgcggagacatagagcttatagaggtgtgctttagttatcctacaagaccagatgaactgatattcg |
29937487 |
T |
|
| Q |
119 |
atggattttctctttcattaccaagcggcactactgcagctttggtagggcaaagtgggagtggtaaatccacagttgttagtttgatagagagatttta |
218 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| | ||||| ||||||||||| || |
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| T |
29937486 |
atggattttctctttcattacaaagcggcaccactgcagctttggtagggcaaagtgggagtgggaaatctacagtcatcagtttaatagagagattcta |
29937387 |
T |
|
| Q |
219 |
tgatccaactgacggtgaaattctcattga |
248 |
Q |
| |
|
||||||||| | |||||| |||||||||| |
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| T |
29937386 |
tgatccaacaaatggtgaagttctcattga |
29937357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 225
Target Start/End: Original strand, 51212502 - 51212683
Alignment:
| Q |
44 |
atgacattcgtggagacatagagctcagggatgtttgctttagttatcctacaagaccagatgaactgatattcaatggattttctctttcattaccaag |
143 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||| || |||| |
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| T |
51212502 |
atgacattcagggagacatagagcttagggaggtttgctttagttatcctacaagaccaaatgaactaatattcaatgcattttctctttcgatatcaag |
51212601 |
T |
|
| Q |
144 |
cggcactactgcagctttggtagggcaaagtgggagtggtaaatccacagttgttagtttgatagagagattttatgatcca |
225 |
Q |
| |
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|| ||||| | ||||| || ||||||||||||||||| ||||| ||||| | | ||||||||||||||||||||||||| |
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|
| T |
51212602 |
tggtactaccgtggctttagtcgggcaaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatcca |
51212683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 54 - 248
Target Start/End: Complemental strand, 49737502 - 49737308
Alignment:
| Q |
54 |
tggagacatagagctcagggatgtttgctttagttatcctacaagaccagatgaactgatattcaatggattttctctttcattaccaagcggcactact |
153 |
Q |
| |
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|||||| ||||| || ||||| ||||||||| |||||||| |||| ||| ||||| |||||||| ||| | ||||| ||||| || |||| |||||||| |
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| T |
49737502 |
tggagatatagaacttagggaagtttgctttggttatccttcaaggccaaatgaaatgatattcgatgcactttctatttcaatatcaagtggcactacc |
49737403 |
T |
|
| Q |
154 |
gcagctttggtagggcaaagtgggagtggtaaatccacagttgttagtttgatagagagattttatgatccaactgacggtgaaattctcattga |
248 |
Q |
| |
|
|| ||||||||||| |||||||||||||| ||||| || ||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
49737402 |
gcggctttggtaggacaaagtgggagtgggaaatcgacggttattagtttgatagagagattttatgatccacagggtggtgaaattctcattga |
49737308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 36285752 - 36285895
Alignment:
| Q |
82 |
tttagttatcctacaagaccagatgaactgatattcaatggattttctctttcattaccaagcggcactactgcagctttggtagggcaaagtgggagtg |
181 |
Q |
| |
|
|||||||||||| |||| |||||| || |||||||| ||||||||||||||| ||||||| || || || ||||||||||| |||||||||||||||| |
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| T |
36285752 |
tttagttatccttcaaggccagatcaagctatattcaaaggattttctctttcaataccaaggggaacaacagcagctttggtggggcaaagtgggagtg |
36285851 |
T |
|
| Q |
182 |
gtaaatccacagttgttagtttgatagagagattttatgatcca |
225 |
Q |
| |
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| ||||| |||||| ||| |||||||||| ||||||||||| |
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|
| T |
36285852 |
ggaaatcaacagttattaacctgatagagaggctttatgatcca |
36285895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 38526038 - 38525898
Alignment:
| Q |
85 |
agttatcctacaagaccagatgaactgatattcaatggattttctctttcat-taccaagcggcactactgcagctttggtagggcaaagtgggagtggt |
183 |
Q |
| |
|
|||||||| ||||||| || || ||||||||||||||||| |||| ||||| || ||||||| || || || || ||||| || |||||||| ||||| |
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| T |
38526038 |
agttatccggcaagacctgaggagctgatattcaatggattctctc-ttcatatatcaagcggaacaaccgcggcattggttggacaaagtggaagtgga |
38525940 |
T |
|
| Q |
184 |
aaatccacagttgttagtttgatagagagattttatgatcca |
225 |
Q |
| |
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|| ||||||||| |||||||| |||| ||||| ||||||||| |
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|
| T |
38525939 |
aagtccacagttattagtttggtagaaagattctatgatcca |
38525898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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