View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_3 (Length: 666)
Name: NF13948_low_3
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 52380854 - 52380556
Alignment:
| Q |
19 |
cattgaacaaaatcaagttcatcaaaaagtaacagagtttcaacaaacctttggatgaaaagcgcaaaatctgagaagtggaagatagtcctagtttaac |
118 |
Q |
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| T |
52380854 |
cattgaacaaaatcaagttcatcaaaaagtaacagagttaaaacgaacctttggatgaaaagtgcaaaatctgagaagtggaagatagtcctagtttaac |
52380755 |
T |
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| Q |
119 |
accctgcacacacagaaagataaattagtatgatagtgatcactgtgcaa------aaacaaaatcagtaggggacgaaagtgtacctgagcggcgaata |
212 |
Q |
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| T |
52380754 |
accctgcacacacagaaagataaattagtatgatcgtgatcactgtgcaactgcaaaaacaaaatcagtaggggaagaaagcgtacctgagcggcgaata |
52380655 |
T |
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| Q |
213 |
gagagcgtgtgagtaaggaattggtacgaagcaaactcgccatagaagtttagtaactatgcgggttcaaaggttactccttaggtgttgattacacag |
311 |
Q |
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| T |
52380654 |
gagagcgtgtgagtaaggaattggtacgaagcaaactcgccatagaagtttagtaactatgcgggttcaaaggttactccttaggtgttgattacacag |
52380556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 554 - 656
Target Start/End: Complemental strand, 52380322 - 52380220
Alignment:
| Q |
554 |
gagaagactgcactacttaatgggccgggcttgtcattttcactaatgggtacccggtactttttatcaaattaataggctattacttttcccacctatg |
653 |
Q |
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| T |
52380322 |
gagaagactgcactacttaatgggccgggcttgtcattttcactaatgggtacccggtactttttatcaaattaatagactattacttttcccacctatg |
52380223 |
T |
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| Q |
654 |
ctt |
656 |
Q |
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| T |
52380222 |
ctt |
52380220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 377 - 468
Target Start/End: Complemental strand, 52380490 - 52380399
Alignment:
| Q |
377 |
ttatgttgatgcatgtcagaagtgaagaagtgttatattgattgattgattgattggggtttatgattctacggggggtttgatttccctcc |
468 |
Q |
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| T |
52380490 |
ttatgttgatgcatgtcagaagtgaagaagtgttatattgattgattgattgattagggtttatgattctacggggggtttgatttccctcc |
52380399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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