View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_31 (Length: 251)
Name: NF13948_low_31
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 59 - 233
Target Start/End: Complemental strand, 29149964 - 29149791
Alignment:
| Q |
59 |
catagaaaagcacaaaaatcactactcaaatttgggtaaaattgcttatccaaccactcaaacaacttcatttattttcttctcctcatccctttctccc |
158 |
Q |
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| T |
29149964 |
catagaaaagcacaaaaatcaccactcaaatttgggtaaaattgcttatccaaccactcaaacaacttcatttattttcttctcctcatcccttcctccc |
29149865 |
T |
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| Q |
159 |
actcatctaaaatttgtgatctagaatttgaaatctggataactataaatattattttgatatggggtactaacc |
233 |
Q |
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| T |
29149864 |
actcatctaaaatctgtgatctagaatttgaaatctgggtaactataaatattattttgatat-gggtactaacc |
29149791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 29152227 - 29152188
Alignment:
| Q |
24 |
aatagtgtattcatcttccatcttcaattacaatccatag |
63 |
Q |
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| T |
29152227 |
aatagtgtattcatcttccatcttcgattgcaatccatag |
29152188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 38708865 - 38709053
Alignment:
| Q |
31 |
tattcatcttccatcttcaattacaatccatagaaaagcacaaaaatcactactcaaatttgggtaaaattgcttatccaaccactcaaacaacttcatt |
130 |
Q |
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| T |
38708865 |
tattcatcttccatcttcatttacaatccaaagaaaagcacgaaaatcactactcaaatttgggtaaaattgcttacccaaccactcaaacaacctcatt |
38708964 |
T |
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| Q |
131 |
tattttcttctcctcatccctt-tctcccactcatctaaaatttgtgatctagaatttgaaatctggataactataaatattattttga |
218 |
Q |
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| T |
38708965 |
tattttcttttcctcatcccttccctcccactcatctaaaatctgtgatctagaatttgagatctaggtaactataaatattgttttga |
38709053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 48379632 - 48379719
Alignment:
| Q |
44 |
tcttcaattacaatccatagaaaagcacaaaaatcactactca--aatttgggtaaaattgcttatccaaccactcaaacaacttcat |
129 |
Q |
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|||||| || |||| ||||||| | ||||||||||| ||||| |||||||||||||||| ||||||||| ||| |||||||||||| |
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| T |
48379632 |
tcttcattttcaattcatagaagaacacaaaaatcagaactcatgaatttgggtaaaattgtttatccaacaactgaaacaacttcat |
48379719 |
T |
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