View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_34 (Length: 238)
Name: NF13948_low_34
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 2115564 - 2115346
Alignment:
| Q |
18 |
cctacacccctccttctgatccttatgagttttctgatgacacttctgatacaaagctcaaattcatgacatgtgttcctgaaacagttcctccaagaat |
117 |
Q |
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| T |
2115564 |
cctacacccctccttctgatccttatgagttttctgatgacacttctgatacaaaactcaaattcatgacatgtgttcctgaaacagttcctccaagaat |
2115465 |
T |
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| Q |
118 |
ttcattctcatttccagttcctagggtttcatttgcaaaaagctctgtttcccctgctaccaccaactccaaacttggaagctgtgatgtctacattgga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2115464 |
ttcattctcatttccagttcctagggtttcatttgcaaaaagctctgtttcccctgctaccactaactccaaacttggaagctgtgatgtctacattgga |
2115365 |
T |
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| Q |
218 |
tttcatggacaaaatccga |
236 |
Q |
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| T |
2115364 |
ttccatggacaaaatccga |
2115346 |
T |
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