View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13948_low_37 (Length: 235)
Name: NF13948_low_37
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_37 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2084804 - 2085022
Alignment:
| Q |
1 |
agcctatgtttggttggacattgttatacaatctcgcgtccagaggctcatataaggtgaaaatgaagaagctcaaatttgcagtgttgagataatgtgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
2084804 |
agcctatgtttggttggacattgttatacaatctcgcgtccagaggctcatataaggtgaaaatgaagaagctcatatttgcagtgttgggataatgtgt |
2084903 |
T |
|
| Q |
101 |
ggtgggtgggtatcttactgtgaaagcaagcacatacattaggattttaaaatccagatgtacaatgatttgtaccttgtgctaccctttgtgctttgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2084904 |
ggtgggtgggtatcttactgtgaaagcaagcacatacattaggattttaaaatccagatgtacaatgatttgtaccttgtgctaccctttgtgctttgca |
2085003 |
T |
|
| Q |
201 |
tagttttgctggaacaaaa |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2085004 |
tagttttgctggaacaaaa |
2085022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University