View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_5 (Length: 575)
Name: NF13948_low_5
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 5 - 559
Target Start/End: Original strand, 28817702 - 28818256
Alignment:
| Q |
5 |
caaaggaaagacatgataataaagcaaaaccaaccatggtagtaagagttatgccataaacnnnnnnnctaccaagtttgtcaccaagccagccaaagaa |
104 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28817702 |
caaaggaaagacctgataataaagcaaaaccaaccatggtagtaagagttatgccataaactttttttctaccaagtttgtcaccaagccagccaaagaa |
28817801 |
T |
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| Q |
105 |
gagttgccctgcaagggtgccacacaacgcaacaccggttattgcattgtttacatttgttggaagtattcctggactatggttagtcggatcagagtag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28817802 |
gagttgccctgcaagggtgccacacaacgcaacaccggttattgcattgtttacgtttgttggaagtattcctggactatggttagtcggatcagagtag |
28817901 |
T |
|
| Q |
205 |
tacaatcgaccgataagctttgtaacggctgtgatgcagaagagatcatatgcatcagtgaaaaatcccattcctgctatcactattgccaagtaatggt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28817902 |
tacaatcgaccgataagctttgtaacggctgtgatgcagaagagatcatatgcatcagtgaaaaatcccattcctgctatcactattgccaagtaatggt |
28818001 |
T |
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| Q |
305 |
aactttgtgtcttggcattgtcaagagatctaaggacaccatggctggtggccatggcattgaacaatggatatggtttgttttgtgtatctgatgtaaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28818002 |
aactttgtgtcttggcattgtcaagagatctaaggacaccatggctggtggccatggcattgaacaatggatatggtttgttttgtgtatctgatgtaaa |
28818101 |
T |
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| Q |
405 |
aatgagaacaagaagaaaagaaggaaatatgctagtttatatgtgaacataattttttgtcttttgggattttgacaaatgatattgctttctaaaagct |
504 |
Q |
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| T |
28818102 |
aatgagaacaagaagaaaagaaggaaatatgctagtttatatatgaacataattttttgtcttttgggattttgacaaatgatattgctttctaaaagct |
28818201 |
T |
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| Q |
505 |
gtaaaaatttcatagtgagtgacgagttatttaaatatcagcttcttcaaggaaa |
559 |
Q |
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| T |
28818202 |
gtaaaaatttcatagtgagtgacgagttatttaaatatcagcttcttcaaggaaa |
28818256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 16183903 - 16183849
Alignment:
| Q |
238 |
atgcagaagagatcatatgcatcagtgaaaaatcccattcctgctatcactattg |
292 |
Q |
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| T |
16183903 |
atgcagaaaagatcatatgcatcagtgaagaatcccattccagctatcacaattg |
16183849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 16223293 - 16223239
Alignment:
| Q |
238 |
atgcagaagagatcatatgcatcagtgaaaaatcccattcctgctatcactattg |
292 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||| || ||||| |||| |
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| T |
16223293 |
atgcagaaaagatcatatgcatcagtgaagaatcccattccagcaatcacaattg |
16223239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 33109003 - 33108948
Alignment:
| Q |
238 |
atgcagaagagatcatatgcatcagtgaaaaatcccattcctgctatcactattgc |
293 |
Q |
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||||| ||||||||||| |||||||||||||| |||||||| || ||||| ||||| |
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| T |
33109003 |
atgcaaaagagatcataggcatcagtgaaaaaacccattccagcaatcacaattgc |
33108948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 16175459 - 16175513
Alignment:
| Q |
238 |
atgcagaagagatcatatgcatcagtgaaaaatcccattcctgctatcactattg |
292 |
Q |
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|||||||| |||||||| ||||||||||| || |||||||| |||||||| |||| |
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| T |
16175459 |
atgcagaaaagatcataagcatcagtgaagaaacccattccagctatcacaattg |
16175513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 33115041 - 33115001
Alignment:
| Q |
238 |
atgcagaagagatcatatgcatcagtgaaaaatcccattcc |
278 |
Q |
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||||||||||||||||| | |||||||||||| |||||||| |
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| T |
33115041 |
atgcagaagagatcataggaatcagtgaaaaaacccattcc |
33115001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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