View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_6 (Length: 520)
Name: NF13948_low_6
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 260 - 504
Target Start/End: Complemental strand, 49977304 - 49977060
Alignment:
| Q |
260 |
agctagccttggcgatgacggttcatgtgtcccccaagagcctgagacttgcagaatttgagggaacaaaatctacattcatagaccttctcgtcttttc |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49977304 |
agctagccttggcgatgacggttcatgtgtcccccaagagcctgagacttgcagaatttgagggaacaaaatctacattcatagaccttctcgtcttttc |
49977205 |
T |
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| Q |
360 |
tatcatcatcatcttcgccgttttccttttccttataacctgtaactgttgtaaccaaatatccaatttaagcaactttgatgagacccttcctttacct |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49977204 |
tatcatcatcatcttcgccgttttccttttccttataacctgtaactgttgtaaccaaatatccaatttaagcaactttgatgagacccttcctttacct |
49977105 |
T |
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| Q |
460 |
taattaaataaagtaaaccaacttcattcccaataacccaaaatc |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49977104 |
taattaaataaagtaaaccaacttcattcccaataacccaaaatc |
49977060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 49977545 - 49977355
Alignment:
| Q |
19 |
taggtgaagggcagcttgagcaacaaggttgtgatcattacgtaagaggagctgacgagcattgttcaacttctctgtttctttctctgcacccaaacca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49977545 |
taggtgaagggcagcttgagcaacaaggttgtgatcattacgtaagaggagctgacgagcattgttcaacttctctgtttctttctctgcacccaaacca |
49977446 |
T |
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| Q |
119 |
accacacaacaatcacaaatcaaatcaaaccgaaaaataataaaattattattatatcaaaggttttattgaaatggaatattttcttttg |
209 |
Q |
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| T |
49977445 |
accacacaacaataacaaatcaaatcaaaccgaaaaataataaaaatattattatatcaaaggttttattgaaatggaatattttcttttg |
49977355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 260 - 349
Target Start/End: Original strand, 49953468 - 49953557
Alignment:
| Q |
260 |
agctagccttggcgatgacggttcatgtgtcccccaagagcctgagacttgcagaatttgagggaacaaaatctacattcatagaccttc |
349 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
49953468 |
agctagccttggcggtgacggttcatgtgtcccccaagagcctgagatttacagaacttgagggaacagaatctacattcatagaccttc |
49953557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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