View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_7 (Length: 510)
Name: NF13948_low_7
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 2367214 - 2366734
Alignment:
| Q |
1 |
agtattgggaatggttaaaaccaatagaaggcataaaaaacaaaggaatgaaacgagaacataccagattgcgatcacaaaaccaaattgtgtaaccagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2367214 |
agtattgggaatggttaaaaccaatagaaggcataaaaaacaaaggaatgaaacgagaacataccagattgcgatcacaaaaccaaattgtgtaaccagt |
2367115 |
T |
|
| Q |
101 |
cggaaagatgtggtttgaaggaagtctcggagcattgaaaagaattgacaaaaatcctgaaaccggagagaacacacgatcagtttcttcagttttctcc |
200 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2367114 |
cggaaagctgtggtttgaa--------------------aagaattgacaaaaatcctgaaaccggagagaacacacgatcagtttcttcagttttctcc |
2367035 |
T |
|
| Q |
201 |
ttcgattgtttgatattacgtaattacttaacacaatagcatagacacaaacatagatggtctcaaacatcttnnnnnnnnnnnnnnn-------ctcgg |
293 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2367034 |
ttcgattgtttgatattacttaattacttaacacaatagcatagacacaaacatagatggtctcaaacatcttaaaaaaaaaaaaaaaaaaaaaactcgg |
2366935 |
T |
|
| Q |
294 |
tatccagtgtaaggtctaactaatcataaggattcaatcctatcgtccaattgtgaggcccttttaaagtcatagcaagagctcagtatgcttgccacca |
393 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2366934 |
tatccagtgtaaggtctaactaatcataaggattcaatcctatcgtccaattgtgaggcccttttaaagtcatagcaagagctcagtatgcttgccacca |
2366835 |
T |
|
| Q |
394 |
aaattggcacctgaggagcacactcactcactctagagtcctaagtcaacactattactcaaacatcaaattaaacacaacaattgcaagacaatcattt |
493 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2366834 |
aaattggaacctgaggagcacactcactcactctagggtcctaagtcaacactattactcaaacatcaaattaaacacaacaattgcaagacaatcattt |
2366735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 2372575 - 2372511
Alignment:
| Q |
74 |
atcacaaaaccaaattgtgtaaccagtcggaaagatgtggtttgaaggaagtctcggagcattga |
138 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||| |
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| T |
2372575 |
atcacaaaacaaaattgtgtaaccagtcacaaagctgctgtttgaaggaagtctcggagcattga |
2372511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Complemental strand, 2372331 - 2372292
Alignment:
| Q |
443 |
cactattactcaaacatcaaattaaacacaacaattgcaa |
482 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||||| |
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| T |
2372331 |
cactattacgcaaacatcaaattaaacataacaattgcaa |
2372292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 12127528 - 12127587
Alignment:
| Q |
113 |
gtttgaaggaagtctcggagcattgaaaagaattgacaaaaatcctgaaaccggagagaa |
172 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||| ||||| |||||||||||| |||||||| |
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|
| T |
12127528 |
gtttgaaggaagcctcggagcatcgaagagatttgactaaaatcctgaaatgggagagaa |
12127587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 12114289 - 12114391
Alignment:
| Q |
70 |
tgcgatcacaaaaccaaattgtgtaaccagtcggaaagatgtggtttgaaggaagtctcggagcattgaaaagaattgacaaaaatcctgaaaccggaga |
169 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||| || |||||||| ||||| | || ||| ||| ||| ||||||||| |||||||| ||||| |
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| T |
12114289 |
tgcgatcacaaaacaaaattgtgtaatcagtcacaaatcggtagtttgaagaaagtcaccgatcatcgaagagatttgacaaaactcctgaaatgggaga |
12114388 |
T |
|
| Q |
170 |
gaa |
172 |
Q |
| |
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||| |
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|
| T |
12114389 |
gaa |
12114391 |
T |
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