View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_8 (Length: 482)
Name: NF13948_low_8
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 35919419 - 35919129
Alignment:
| Q |
12 |
catcatcatcaacgagacagtttacagctaaagtaattatctgaaattttacctgcaagcaaacacgcgcacaaattataagatataagagaaaaattaa |
111 |
Q |
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| T |
35919419 |
catcatcatcaacgagacagattacagctaaagtaattatctgaaattttacctgcaagcaaacacgcgcacaaattataagatataagagaaaaattaa |
35919320 |
T |
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| Q |
112 |
ttgctttacagattgcgatatgatgcaaagttttatcagattttggacctttaattacctggcgcttgttaggaggaccatttggatcaaaaaggccaac |
211 |
Q |
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| T |
35919319 |
ttgctttacagattgcgatatgatgcaaagttttatcagattttggacctttaattacctggcgcttgttaggaggaccatttggatcaaaaaggccaac |
35919220 |
T |
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| Q |
212 |
ctctgatacagaacctgttgccgaatttatgataacagatcgacgaggtaatgcttcagatagattgtatatagcgtccaccaaatcctac |
302 |
Q |
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| T |
35919219 |
ctctgatacagaacctgttgccgaatttatgataacagatcgacgaggtaatgcttcagatagattgtatatagcgtccaccaaatcctac |
35919129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 355 - 464
Target Start/End: Complemental strand, 35919076 - 35918967
Alignment:
| Q |
355 |
gcatatggaatgcgaagattggttaattaaagttatgctacctgaccagcattcaaattcattatatgaggggtgaatgttcccccaccggaaccaggag |
454 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35919076 |
gcatatggaatgcgaagattggttaattaaagttatactacctgaccagcattcaaattcattatatgaggggtgaatgttcccccaccggaaccaggag |
35918977 |
T |
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| Q |
455 |
ggtgcccttt |
464 |
Q |
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|||||||||| |
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| T |
35918976 |
ggtgcccttt |
35918967 |
T |
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