View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13948_low_9 (Length: 442)
Name: NF13948_low_9
Description: NF13948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13948_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 9 - 426
Target Start/End: Complemental strand, 40764774 - 40764347
Alignment:
| Q |
9 |
agaactctaaaagcagcatctgaaccggaaactaaacttaaaagctacagtccccctccttctcctgttagaacaaattaatccacttgatatggtagat |
108 |
Q |
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| T |
40764774 |
agaactctaaaagcagcatctgaaccggaaactaaacttaaaagctacagtccccctccttctcctgttagaacaaattaatccacttgatatggtagat |
40764675 |
T |
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| Q |
109 |
gagaactgtatacaaacattagacaattctcatctaaagtataattggcctgaacttccattagatgcaatccatcatgttgattcatttacaaaatttt |
208 |
Q |
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| T |
40764674 |
gagaactgtatacaaacattagacagttctcatctaaagtataattggcctgaacttccattagatgcaatccatcatgttgattcatttccaaaatttt |
40764575 |
T |
|
| Q |
209 |
gcaaagtattatgcagctcggttagaataggatttaacttgatagatagtgtttcattgtattatatgaaatgaaacgttcacaccgaagttatggaatt |
308 |
Q |
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| T |
40764574 |
gcaaagtattatgcagctcggttagaataggatttaacttgatagatagtgtttcattgta-tatatgaaatgaaacgttcacaccgaagttatggaatt |
40764476 |
T |
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| Q |
309 |
ttgagtttgttatggagaaaaaagcaaaaggaaatggtgcctcaagtatttgattcccttgcagatgaagaa-----------ccgaattaccaattaac |
397 |
Q |
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| T |
40764475 |
ttgagtttgttatggagaaaaaagcaaaaggaaatggtgcctcaagtatttgattcccttgcaaatgaagaaatgatactttttcgaattaccaattgac |
40764376 |
T |
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| Q |
398 |
aaagataaatggaataggaagtgtgaaat |
426 |
Q |
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| T |
40764375 |
aaagataaatggaataggaagtgtgaaat |
40764347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 375
Target Start/End: Complemental strand, 40777259 - 40777035
Alignment:
| Q |
152 |
attggcctgaacttccattagatgcaatccatcatgttgattcatttacaaaattttgcaaagtattatgcagctcggttagaataggatttaacttgat |
251 |
Q |
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| T |
40777259 |
attggcctgaacgtccattggatgcaattcatgatgttgactcgactccaaaattgcgtagagtactaagcagttcagctagaattggcttaaaccttat |
40777160 |
T |
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| Q |
252 |
agatagtgtttcattgtattat-atgaaatgaaacgttcacaccgaagttatggaattttgagtttgttatggagaaaaaagcaaaaggaaatggtgcct |
350 |
Q |
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| T |
40777159 |
ggatagtgcttccttgtatggttatggaatgaagcgttcacaccaaagttctggaaatttgaatttgttatggagagaaaagcaacaagaaatgatgcct |
40777060 |
T |
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| Q |
351 |
caagtatttgattcccttgcagatg |
375 |
Q |
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| T |
40777059 |
aaagtatttgattcccttgctgatg |
40777035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 40770435 - 40770344
Alignment:
| Q |
275 |
tgaaatgaaacgttcacaccgaagttatggaattttgagtttgttatggagaaaaaagcaaaaggaaatggtgcctcaagtatttgattccc |
366 |
Q |
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| T |
40770435 |
tgaaatgaaaagtttacaccaaagttctggaaatttcagtttgttatggagtgaaaagcaacaggaaatagtgcctcaagtatttgattccc |
40770344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 40777434 - 40777374
Alignment:
| Q |
27 |
tctgaaccggaaactaaacttaaaagctacagtccccctccttctcctgttagaacaaatt |
87 |
Q |
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| T |
40777434 |
tctgaacccgaaactaaacagaaaagctatagtgcccctccttctcctattagaacaaatt |
40777374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 40770535 - 40770491
Alignment:
| Q |
152 |
attggcctgaacttccattagatgcaatccatcatgttgattcat |
196 |
Q |
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| T |
40770535 |
attggcctgaacttcggttagatccaatccatcatgttgattcat |
40770491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 221 - 369
Target Start/End: Complemental strand, 10128300 - 10128152
Alignment:
| Q |
221 |
gcagctcggttagaataggatttaacttgatagatagtgtttcattgtattat-atgaaatgaaacgttcacaccgaagttatggaattttgagtttgtt |
319 |
Q |
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||||||| | |||||| ||||||||||||||||||||| |||||||||| | ||| ||||||||||||||||| ||||| ||||| ||| |||||||| |
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| T |
10128300 |
gcagctcagctagaatgagatttaacttgatagatagtgcttcattgtatggttatggaatgaaacgttcacaccaaagttctggaaatttcagtttgtt |
10128201 |
T |
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| Q |
320 |
atggagaaaaaagcaaaaggaaatggtgcctcaagtatttgattcccttg |
369 |
Q |
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| T |
10128200 |
atggagagaaaagcaaaaggaaatggtgcctcaagta-ttgattcccttg |
10128152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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