View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13949_high_16 (Length: 210)
Name: NF13949_high_16
Description: NF13949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13949_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 24616459 - 24616275
Alignment:
| Q |
16 |
aagaaaatattaatgaagtgaatgtcagaataaataaacaaagagattgctaatttaattatgnnnnnnnn-tgataacctgcta--------gtaggcg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
24616459 |
aagaaaatattaatgaagtgaatgtcagaataaataaacaaagagattgctaatttaattatgaaaaaaaaatgataacctgctatcgtagttgtaggcg |
24616360 |
T |
|
| Q |
107 |
atggaacggaaaagccactaaagtggatcctccaacaacaagctactaccatcaaagttgcaatgttgtgaatcctctttgtaat |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24616359 |
atggaacggaaaagccactaaagtggatcctccaacaacaagctactgccatcaaagttgcaatgttgtgaatcctctttgtaat |
24616275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 24107655 - 24107706
Alignment:
| Q |
27 |
aatgaagtgaatgtcagaataaataaacaaagagattgctaatttaattatg |
78 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||| |||||||| |||| |
|
|
| T |
24107655 |
aatgaagtaaatgtcagaacaaataaacaaagagattgttaatttaagtatg |
24107706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 24114366 - 24114407
Alignment:
| Q |
36 |
aatgtcagaataaataaacaaagagattgctaatttaattat |
77 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24114366 |
aatgtaagaataaataaacaaagagattgttaatttaattat |
24114407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 24107761 - 24107828
Alignment:
| Q |
125 |
taaagtggatcctc-caacaacaagctactaccatcaaagttgcaatgttgtgaatcctctttgtaat |
191 |
Q |
| |
|
||||||||| |||| ||| ||||||||||| | ||| ||||||||||| |||| |||||||||||||| |
|
|
| T |
24107761 |
taaagtggaccctctcaagaacaagctactgctatcgaagttgcaatgctgtgcatcctctttgtaat |
24107828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University