View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13949_high_2 (Length: 670)
Name: NF13949_high_2
Description: NF13949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13949_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 303 - 655
Target Start/End: Original strand, 19755130 - 19755483
Alignment:
| Q |
303 |
attctaacctctaaacggcgatcaccaagtaccactatgccaccatatttgattgcttctttatatgccgaacgaaactgagcaaaaggatagacgtcac |
402 |
Q |
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| T |
19755130 |
attctaacctctaaacggcgatcaccaagtaccactatgccactatatttgattgcttctttatatgccgaacgaaactgagcaaaaggataaccgtcac |
19755229 |
T |
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| Q |
403 |
acctactgtcaatctgtcaaattttcaagggnnnnnnntggttcatgataattgcaacannnnnnnnn-caaaaatcaaatatcattctggaataattta |
501 |
Q |
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| T |
19755230 |
acctactgtcaatctgtcagattttcaagggaaaaaaatggttcatgataattgcaacattttttttttcaaaaatcaaatatcattctggaataattta |
19755329 |
T |
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| Q |
502 |
gaatgaaagatgaatagcagacaaatgtaataggatgataaatataattgtcaaacatcgaaacatgcctcggcatcgaaccagctagtaaccattcgag |
601 |
Q |
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| T |
19755330 |
gaatgaaagatgaatagtagacaaatgtaataggatgataaatataattgtcaaacattgaaacatgcctcggcatccaaccagctagtaaccattcgaa |
19755429 |
T |
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| Q |
602 |
agatgctatatttttccttcctcattgcatcattcatttctcccatggtaagtg |
655 |
Q |
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| T |
19755430 |
agatgctatatttttccttcctcattgcatcattcatttctcccatggtaagtg |
19755483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 19754855 - 19755089
Alignment:
| Q |
15 |
atgaactatagtaatccaaagtttgctgagagataagtaaattttggccaaaaattgtttcagctaaagatcaaactcagattctaatgatgggtttgtc |
114 |
Q |
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| T |
19754855 |
atgaactatagtaatccaaagtttgccgagagataagtaagttttggccaaaaattgtttcagctaaagatcaaactcagattctaatgatgggtttgtc |
19754954 |
T |
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| Q |
115 |
ttaaatagaaactcattaacaaaacagaggtttataggatatagcattcattctcaagtcacaaattttactatcctaataatcattgatttattaaaat |
214 |
Q |
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| T |
19754955 |
ttaaatagaaactcattaacaaaa--------------atatagcattcattctcaagtcacaaattttactatcctaataattattgatttattaaaat |
19755040 |
T |
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| Q |
215 |
atcaagaagtgaaaactttctaaacaactatcagtggttttcatggatc |
263 |
Q |
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| T |
19755041 |
atcaagaagtgaaaactttctaaagaactatcagtggttttcatggatc |
19755089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 502 - 630
Target Start/End: Complemental strand, 33377298 - 33377170
Alignment:
| Q |
502 |
gaatgaaagatgaatagcagacaaatgtaataggatgataaatataattgtcaaacatcgaaacatgcctcggcatcgaaccagctagtaaccattcgag |
601 |
Q |
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||||||||||| ||||| || ||||||||||||||||||||||||||||||||| || |||| |||||| |||||| ||||| ||| ||| |||| | |
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| T |
33377298 |
gaatgaaagattaatagttgaaaaatgtaataggatgataaatataattgtcaaatattgaaaaatgccttggcatccaaccaactaataagtattcaaa |
33377199 |
T |
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| Q |
602 |
agatgctatatttttccttcctcattgca |
630 |
Q |
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| T |
33377198 |
agatgctatattttttcttcctcattgca |
33377170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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