View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13949_high_6 (Length: 425)
Name: NF13949_high_6
Description: NF13949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13949_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Complemental strand, 9630264 - 9629864
Alignment:
| Q |
9 |
agatgaaggaataggaccaaagaaattgtttgcatcaagtgctagtatagtcaagttttttatgttccctatttcgtttggtaatcgaccgcccaaaagg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9630264 |
agatgaaggaataggaccaaagaaattgtttccatcaagtgctagtatagtcaagttttttatgttccctatttcgtttggtaatcgaccgcccaaaagg |
9630165 |
T |
|
| Q |
109 |
gtatcttggaaaagaagattcctgatactgataagcccagttctgggcttatcagtgccatcaggaaacaaacgacggtctaatataccagacacgtcgt |
208 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9630164 |
gtatcttggaaaagtagattcctgatactgataagcccagaactgggcttatcagtgccatcaggaaacaaacgacggtctaatataccagacacatcgt |
9630065 |
T |
|
| Q |
209 |
ttcttgaaacatcaagctcataaacttgagtcaaattagcaatagaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagttt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9630064 |
ttcttgaaacatcaagctcataaacttgagtcaaattagctatagaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagttt |
9629965 |
T |
|
| Q |
309 |
cgaaagaacgccgatgttttcaggtataacaccggtgagattgtttgttttaagatcaagacgaacaaggttaggaaaaaccgacaaatttaagtgatta |
408 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9629964 |
cgaaagaacaccgatgttttcaggtataacaccggtgagattgtttgttttaagatcaagacgaacaaggttaggaaaaaccgacaaatttaagtgatta |
9629865 |
T |
|
| Q |
409 |
a |
409 |
Q |
| |
|
| |
|
|
| T |
9629864 |
a |
9629864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Original strand, 9630109 - 9630138
Alignment:
| Q |
135 |
actgataagcccagttctgggcttatcagt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
9630109 |
actgataagcccagttctgggcttatcagt |
9630138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Original strand, 13606982 - 13607382
Alignment:
| Q |
9 |
agatgaaggaataggaccaaagaaattgtttgcatcaagtgctagtatagtcaagttttttatgttccctatttcgtttggtaatcgaccgcccaaaagg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | |
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|
| T |
13606982 |
agatgaaggaataggaccaaagaaattgtttccatcaagtgctagtatagtcaagttttttatgttccctaattcgttaggtaatcgaccgcccaaaaag |
13607081 |
T |
|
| Q |
109 |
gtatcttggaaaagaagattcctgatactgataagcccagttctgggcttatcagtgccatcaggaaacaaacgacggtctaatataccagacacgtcgt |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || |||| |
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|
| T |
13607082 |
atatcttggaaaagtagattcctgatactgataagcccagaactgggcttatcagtgccatcaggaaacaaacgaaggtctaatataccagaaacatcgt |
13607181 |
T |
|
| Q |
209 |
ttcttgaaacatcaagctcataaacttgagtcaaattagcaatagaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagttt |
308 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13607182 |
ttcatgaaacatcaagctcataaacttgagtcaaattagcaatagaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagttt |
13607281 |
T |
|
| Q |
309 |
cgaaagaacgccgatgttttcaggtataacaccggtgagattgtttgttttaagatcaagacgaacaaggttaggaaaaaccgacaaatttaagtgatta |
408 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
13607282 |
cgaaagaacaccgatgttttcaggtataacaccggtgagattgtttgatttaagatcaagacgaaaaaggttaggaaaaacagacaaatttaagtgatta |
13607381 |
T |
|
| Q |
409 |
a |
409 |
Q |
| |
|
| |
|
|
| T |
13607382 |
a |
13607382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 409
Target Start/End: Complemental strand, 13903023 - 13902623
Alignment:
| Q |
9 |
agatgaaggaataggaccaaagaaattgtttgcatcaagtgctagtatagtcaagttttttatgttccctatttcgtttggtaatcgaccgcccaaaagg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| | |
|
|
| T |
13903023 |
agatgaaggaataggaccaaagaaattgtttccatcaagtgctagtacagtcaagttttttatgttccctaattcgttcggtaatcgaccgcccaaaaag |
13902924 |
T |
|
| Q |
109 |
gtatcttggaaaagaagattcctgatactgataagcccagttctgggcttatcagtgccatcaggaaacaaacgacggtctaatataccagacacgtcgt |
208 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||| |||||| ||||||||| ||||||| |
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|
| T |
13902923 |
ttatcttggaaaagtagattcctgatgctgataagcccagaactgagtttatcagtgccatcaggaaacaaacgatggtctagtataccagatacgtcgt |
13902824 |
T |
|
| Q |
209 |
ttcttgaaacatcaagctcataaacttgagtcaaattagcaatagaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattgaagttt |
308 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
13902823 |
ttcgtgaaacatcaagctcataaacttgagtcatattagcaatagaaagaggcaaagttccattgagataatttgtagaaagatcaagaaattggagttt |
13902724 |
T |
|
| Q |
309 |
cgaaagaacgccgatgttttcaggtataacaccggtgagattgtttgttttaagatcaagacgaacaaggttaggaaaaaccgacaaatttaagtgatta |
408 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| |||||| |||||||| ||||| |||||||||||| |
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|
| T |
13902723 |
tgaaagaacaccgatgttttcaggtatgacaccggtgagattgtttgctttgagatcaagacgaagaaggtttggaaaaactgacaagtttaagtgatta |
13902624 |
T |
|
| Q |
409 |
a |
409 |
Q |
| |
|
| |
|
|
| T |
13902623 |
a |
13902623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 13607137 - 13607108
Alignment:
| Q |
135 |
actgataagcccagttctgggcttatcagt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
13607137 |
actgataagcccagttctgggcttatcagt |
13607108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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