View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13949_low_1 (Length: 1605)

Name: NF13949_low_1
Description: NF13949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13949_low_1
NF13949_low_1
[»] chr6 (41 HSPs)
chr6 (930-1447)||(31564316-31564843)
chr6 (164-453)||(31565162-31565451)
chr6 (585-871)||(31564838-31565117)
chr6 (518-782)||(33414524-33414788)
chr6 (287-453)||(33414293-33414459)
chr6 (785-1151)||(33385314-33385670)
chr6 (785-1151)||(33259583-33259959)
chr6 (518-757)||(33269497-33269740)
chr6 (518-782)||(33395008-33395274)
chr6 (555-782)||(33258187-33258416)
chr6 (297-453)||(33383760-33383916)
chr6 (19-122)||(31565454-31565557)
chr6 (518-689)||(33383981-33384156)
chr6 (1188-1352)||(33416366-33416536)
chr6 (785-977)||(33416152-33416345)
chr6 (297-428)||(33351400-33351530)
chr6 (612-784)||(33278972-33279139)
chr6 (785-970)||(24631975-24632161)
chr6 (343-453)||(33292802-33292912)
chr6 (24-125)||(33413920-33414021)
chr6 (678-782)||(33293090-33293194)
chr6 (311-414)||(33258067-33258170)
chr6 (529-619)||(33292988-33293078)
chr6 (115-271)||(33414090-33414254)
chr6 (377-449)||(33269355-33269427)
chr6 (829-1011)||(9165228-9165418)
chr6 (43-125)||(33351038-33351120)
chr6 (1309-1438)||(33385707-33385837)
chr6 (145-283)||(33351212-33351363)
chr6 (615-739)||(33280358-33280482)
chr6 (1022-1128)||(24631864-24631970)
chr6 (940-1014)||(29274300-29274376)
chr6 (1364-1423)||(33281320-33281376)
chr6 (387-427)||(31567428-31567468)
chr6 (736-782)||(28873045-28873091)
chr6 (1381-1435)||(33416538-33416592)
chr6 (1364-1423)||(33301947-33302003)
chr6 (1045-1120)||(281808-281881)
chr6 (830-871)||(33282241-33282282)
chr6 (830-871)||(33398042-33398083)
chr6 (830-871)||(33408952-33408993)
[»] chr2 (12 HSPs)
chr2 (561-782)||(17447760-17447982)
chr2 (287-453)||(17445747-17445910)
chr2 (193-269)||(17445951-17446026)
chr2 (51-125)||(17446159-17446233)
chr2 (1306-1435)||(17443374-17443503)
chr2 (518-590)||(17445607-17445679)
chr2 (1086-1151)||(17443537-17443602)
chr2 (933-1014)||(34339039-34339122)
chr2 (941-981)||(3102617-3102657)
chr2 (1046-1123)||(14299588-14299663)
chr2 (1521-1559)||(26328079-26328117)
chr2 (953-1014)||(7103554-7103615)
[»] chr7 (17 HSPs)
chr7 (1450-1584)||(35958658-35958792)
chr7 (1450-1584)||(35978113-35978247)
chr7 (1450-1584)||(35999525-35999659)
chr7 (1456-1582)||(36216894-36217020)
chr7 (1486-1582)||(35947455-35947551)
chr7 (1456-1527)||(35930964-35931035)
chr7 (1489-1582)||(36226562-36226655)
chr7 (1524-1584)||(35926397-35926457)
chr7 (1494-1578)||(36220925-36221009)
chr7 (1472-1583)||(35973980-35974091)
chr7 (1472-1583)||(35995392-35995503)
chr7 (1008-1121)||(3468614-3468725)
chr7 (933-1014)||(3610811-3610894)
chr7 (941-1062)||(26935573-26935696)
chr7 (899-977)||(22388014-22388093)
chr7 (1483-1557)||(35982708-35982782)
chr7 (1483-1557)||(36004120-36004194)
[»] scaffold0428 (8 HSPs)
scaffold0428 (555-782)||(2308-2537)
scaffold0428 (915-1151)||(3802-4047)
scaffold0428 (612-784)||(15114-15281)
scaffold0428 (311-414)||(2188-2291)
scaffold0428 (615-739)||(13771-13895)
scaffold0428 (785-871)||(3704-3791)
scaffold0428 (1364-1423)||(12876-12932)
scaffold0428 (830-871)||(11970-12011)
[»] chr5 (7 HSPs)
chr5 (1189-1343)||(30653203-30653360)
chr5 (940-1062)||(11684346-11684468)
chr5 (1016-1081)||(30653373-30653438)
chr5 (933-1014)||(32059660-32059742)
chr5 (933-977)||(10391269-10391313)
chr5 (1070-1121)||(11457158-11457209)
chr5 (933-972)||(29115328-29115367)
[»] chr8 (8 HSPs)
chr8 (1045-1123)||(13000381-13000457)
chr8 (938-1006)||(26717178-26717246)
chr8 (942-1028)||(5290566-5290649)
chr8 (933-996)||(26716527-26716590)
chr8 (1045-1123)||(30191098-30191174)
chr8 (980-1066)||(10079082-10079168)
chr8 (1017-1066)||(30389108-30389157)
chr8 (940-1014)||(34788498-34788574)
[»] chr3 (6 HSPs)
chr3 (1045-1121)||(43115093-43115167)
chr3 (933-1011)||(38462197-38462277)
chr3 (940-1013)||(22232749-22232824)
chr3 (924-1006)||(3015928-3016011)
chr3 (1045-1123)||(37273171-37273247)
chr3 (1048-1144)||(24624250-24624344)
[»] chr1 (2 HSPs)
chr1 (943-996)||(44207697-44207750)
chr1 (1072-1123)||(15581316-15581367)
[»] scaffold0024 (1 HSPs)
scaffold0024 (955-1028)||(21335-21410)
[»] chr4 (3 HSPs)
chr4 (942-996)||(32920489-32920543)
chr4 (939-1006)||(47970240-47970309)
chr4 (956-1026)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 41)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 930 - 1447
Target Start/End: Complemental strand, 31564843 - 31564316
Alignment:
Q  930 aagataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagctt 1029  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  31564843 aagataaacacttatcataaaattgcatatgtataagctatttttataacaagataaaatgaagtcacactgttttcctacaagtgattttcataagctt 31564744  T
Q  1030 ttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 1129  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31564743 ttctagacaacatatggaaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 31564644  T
Q  1130 actgtataagttcaaatacatcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctctttt------acat 1223  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||      ||||    
T  31564643 agtgtataagttcaaatatatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacat 31564544  T
Q  1224 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaac----agcaaataagatga 1319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  31564543 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaataagatga 31564444  T
Q  1320 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 1419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564443 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 31564344  T
Q  1420 ttcatcttcaacttgtactaccacaggt 1447  Q
    ||||||||||||||||||||||||||||    
T  31564343 ttcatcttcaacttgtactaccacaggt 31564316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 286; E-Value: 1e-159
Query Start/End: Original strand, 164 - 453
Target Start/End: Complemental strand, 31565451 - 31565162
Alignment:
Q  164 ttggcgtctaatcaacatttggttattatgatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565451 ttggcgtctaatcaacatttggttattatgatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttc 31565352  T
Q  264 ttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcacca 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31565351 ttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgccgcacattaatgttctcgccaatggcagctatactttgcctcacca 31565252  T
Q  364 agtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565251 agtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 31565162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 585 - 871
Target Start/End: Complemental strand, 31565117 - 31564838
Alignment:
Q  585 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 684  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  685 gaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 784  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 31564918  T
Q  785 caagtgttggtgatatagttgctgcaattcaaaggggacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 871  Q
     ||||||||||       |||||||||| ||||||||   ||||||||||||||||| || ||| |||||||||||||| |||||||    
T  31564917 taagtgttggt-------ttgctgcaatccaaagggggtggaatagacatttaaaaaatagaaatcttatgtaagaatttaaagata 31564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 181; E-Value: 5e-97
Query Start/End: Original strand, 518 - 782
Target Start/End: Original strand, 33414524 - 33414788
Alignment:
Q  518 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 617  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  33414524 cttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaat 33414623  T
Q  618 ttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactc 717  Q
    ||||||||||| || | ||||||||||||||| ||||||||||||||||||| |||  ||| |||||||||||||||| ||||||||||||||||  ||     
T  33414624 ttctcacttctgccaacaaagtccgtttcacagttcacttcaattagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagctgcta 33414723  T
Q  718 gtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 782  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  33414724 gtcttccggatttcttatcagcggatgagagaccctttttcctgagatatgcttgcgccttttca 33414788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 8e-65
Query Start/End: Original strand, 287 - 453
Target Start/End: Original strand, 33414293 - 33414459
Alignment:
Q  287 tgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtca 386  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  33414293 tgtttctccgagagtgaaccgaacaaaacgccgcactttaatgttctctccaatagcagctatactttgcctcaccaagtctttcactacaacactgtca 33414392  T
Q  387 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 453  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  33414393 tccttaataaaaggctgctctagaagagcaagctctcctaacctctttgagattcttccctcgacaa 33414459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 122; E-Value: 7e-62
Query Start/End: Original strand, 785 - 1151
Target Start/End: Original strand, 33385314 - 33385670
Alignment:
Q  785 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 883  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| ||||||||||  |||| ||| ||||||||||||||||||||||||||||||||||    
T  33385314 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacgattagaaatcttatgtaagaattcaaagataggtgaacaggct 33385413  T
Q  884 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-- 981  Q
     |||| ||||||           |||| | |||||| ||| |||| ||||||| |||||  |||| || |||| |||||||||| ||||||||| |||      
T  33385414 ggaaacctaaga-----------taaacagcctaatgaaaacttataagataagcactttacatataagtgctgatgtataagcaatttttataacaaaa 33385502  T
Q  982 gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 1081  Q
    |||||||||||||||||||  | | |||||||| |||||||||||||||||||||||   || ||||| |||||||||||||||||| ||||||||||||    
T  33385503 gataaaatgaagtcatact--tatgctataagctattttcataagcttttctagacagtttatggaaaaaagctgaaaacaacttttatggacatgtcat 33385600  T
Q  1082 tggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 1151  Q
      | ||||||||| |||||||| ||||||| ||||||||||| |||| | |  |||||||||||| ||||    
T  33385601 gagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaatgcatc 33385670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 120; E-Value: 1e-60
Query Start/End: Original strand, 785 - 1151
Target Start/End: Original strand, 33259583 - 33259959
Alignment:
Q  785 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 883  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| |||||||||||||||||||||| || |  |||||    
T  33259583 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagatatgtaagaaggct 33259682  T
Q  884 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagc--aa 981  Q
     |||| ||||||| | ||||||||||| | ||||||| ||||||| |||||||   |||  |||| || ||||||||||||||||||||||||| |  ||    
T  33259683 ggaaacctaagaccttgtttggataaacagcctaattcaagcttataagataagagctttacatataagtgcttatgtataagctatttttataacaaaa 33259782  T
Q  982 gataaaatgaagtcatactgttttc-------ctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggac 1074  Q
    |||||| ||||||||||||||||||       |||||||| ||||||||||||||||||| |||  ||| | |||   |||||||||| ||||| |||||    
T  33259783 gataaattgaagtcatactgttttcctatatgctataagctattttcataagcttttctatacagtatatgtaaaatggctgaaaacagcttttatggac 33259882  T
Q  1075 atgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 1151  Q
    |||||||| |  |||||||| |||||||| ||||||| |  |||||||| |||| | | ||||||||||||||||||    
T  33259883 atgtcattagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataagttcaaatacatc 33259959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 119; E-Value: 5e-60
Query Start/End: Original strand, 518 - 757
Target Start/End: Original strand, 33269497 - 33269740
Alignment:
Q  518 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 617  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  33269497 cttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaat 33269596  T
Q  618 ttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatg----tatgtagcgattcttccttcagca 713  Q
    ||||||||||| || | |||||| |||||||| |||||||||||||||||||  |||  || || |||||||    |||||| |||||||| |||||||     
T  33269597 ttctcacttctgccaacaaagtcggtttcacagttcacttcaattagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagct 33269696  T
Q  714 actcgtcttccggatttcttgtcagcggatgagagacccttttt 757  Q
     || ||||| | || ||||| |||||||||||||||||||||||    
T  33269697 gctagtcttgcagacttcttatcagcggatgagagacccttttt 33269740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 104; E-Value: 4e-51
Query Start/End: Original strand, 518 - 782
Target Start/End: Original strand, 33395008 - 33395274
Alignment:
Q  518 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 617  Q
    ||||||| || |||||| | ||||| |||||||||||||||||||||||||||||||||||||   |||||||| |||||||  ||| ||||||||||||    
T  33395008 cttcgtcgcaatggtttcaagaataccttcaatagatacaaactgaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaat 33395107  T
Q  618 ttctcacttcta--ccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaac 715  Q
     | ||||||||   || | |||||| |||||||| ||||||||||| ||||||   ||| ||| ||||| ||||||| || ||||||||||||||||  |    
T  33395108 ctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgc 33395207  T
Q  716 tcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 782  Q
    | | || ||||||||||||||||| ||||||||||||||| |||| ||||||| ||| |||||||||    
T  33395208 tagcctaccggatttcttgtcagctgatgagagaccctttgttctaaggtatgattgggccttttca 33395274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 102; E-Value: 6e-50
Query Start/End: Original strand, 555 - 782
Target Start/End: Original strand, 33258187 - 33258416
Alignment:
Q  555 acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttc 653  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  |||    
T  33258187 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc 33258286  T
Q  654 acttcaattagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccc 752  Q
    |||||||||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| ||||||||||||||||||    
T  33258287 acttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccc 33258386  T
Q  753 ttttttctgaggtatgcttgcgccttttca 782  Q
    |||||  |||| |||||||||| |||||||    
T  33258387 tttttgatgagatatgcttgcggcttttca 33258416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 297 - 453
Target Start/End: Original strand, 33383760 - 33383916
Alignment:
Q  297 agagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatga 396  Q
    ||||||||||||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  33383760 agagtgaaccgaacaaaacgcccagctttaatgttctcgccaatggcagctatactttgcctcaccaagtctttcactgaaacactgtcatccttaatga 33383859  T
Q  397 aaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 453  Q
    ||||||||| || |||||| || |||  ||| |||||||||||||||||||||||||    
T  33383860 aaggctgctttataagagcgagatctggtaacctctttgagattcttccctcaacaa 33383916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 100; E-Value: 1e-48
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 31565557 - 31565454
Alignment:
Q  19 gtaatcaaagagtgtctatccttgaatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaatt 118  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565557 gtaatcaaagagtggctatccttgaatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaatt 31565458  T
Q  119 caga 122  Q
    ||||    
T  31565457 caga 31565454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 87; E-Value: 6e-41
Query Start/End: Original strand, 518 - 689
Target Start/End: Original strand, 33383981 - 33384156
Alignment:
Q  518 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagca----gcaacttgcattgcaagatcatgaacaaactcctt 613  Q
    |||||||||| |||||| | |||||||||||| ||||||||||||||||| ||||||||||    || ||||||||||||||||||| ||| ||||||||    
T  33383981 cttcgtcacaatggtttcaagaatatcttcaacagatacaaactgaacctctggacaagcaagcagccacttgcattgcaagatcatcaaccaactcctt 33384080  T
Q  614 gaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatg 689  Q
     | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |||||||||| |||||||    
T  33384081 aattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccgatgtgtgaatagtgaatg 33384156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 87; E-Value: 6e-41
Query Start/End: Original strand, 1188 - 1352
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
Q  1188 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 1285  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  1286 agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag 1352  Q
    |||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||||  |||||||    
T  33416466 agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag 33416536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 785 - 977
Target Start/End: Original strand, 33416152 - 33416345
Alignment:
Q  785 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 883  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| ||||| ||  ||||  ||| ||||||||||||||||||||| ||    
T  33416152 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaattagaagtcttaactaaaaattcaaagataggtgaacagact 33416251  T
Q  884 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 977  Q
    ||||||| | ||| | ||||||||||| ||||||||||||||||| ||||||| | || || || ||| |||||||||||||||||||||||||    
T  33416252 agaaaaccatgaccttgtttggataaacaacctaattaaagcttataagataagcgctcattatcaaagtgcttatgtataagctatttttata 33416345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 80; E-Value: 8e-37
Query Start/End: Original strand, 297 - 428
Target Start/End: Original strand, 33351400 - 33351530
Alignment:
Q  297 agagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatga 396  Q
    |||||||||||||||||||||||| |  |||||||||| |||||  |||||||||||||||||||||||||||| |||| ||||||||| |||||||| |    
T  33351400 agagtgaaccgaacaaaacgccgcgctttaatgttctctccaataccagctatactttgcctcaccaagtctttcactacaacactgtcgtccttaat-a 33351498  T
Q  397 aaggctgctctagaagagcaagctctcctaat 428  Q
    |||| ||| |||||||||||||||||||||||    
T  33351499 aaggatgccctagaagagcaagctctcctaat 33351530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 612 - 784
Target Start/End: Original strand, 33278972 - 33279139
Alignment:
Q  612 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 711  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 33279071  T
Q  712 caactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 784  Q
     | ||    | ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  33279072 tagct----tgccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 33279139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 75; E-Value: 8e-34
Query Start/End: Original strand, 785 - 970
Target Start/End: Complemental strand, 24632161 - 24631975
Alignment:
Q  785 caagtgttggtgatatagttgctgcaattcaaagggga-cagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 883  Q
    |||||| |||||||| |||||||||||| ||||  ||| ||||| |||||||||| ||||| ||| |||||||| |||||||||||| |||||||| | |    
T  24632161 caagtgctggtgataaagttgctgcaatccaaacaggagcagaacagacatttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagtt 24632062  T
Q  884 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctat 970  Q
     |||||||||||| | ||||||||||  ||| ||||||||  ||| ||||||||| ||||||||| || |||||||| |||||||||    
T  24632061 ggaaaactaagacctcgtttggataagcaacttaattaaatattataagataaacgcttatcatataagtgcttatgcataagctat 24631975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 75; E-Value: 8e-34
Query Start/End: Original strand, 343 - 453
Target Start/End: Original strand, 33292802 - 33292912
Alignment:
Q  343 cagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattct 442  Q
    ||||||||||||||||| |||||||||| |   ||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||    
T  33292802 cagctatactttgcctctccaagtctttcaaagaaacactgtcatccttaatgaaaggctgctctataagagaaagccctcctaacctctttgagattct 33292901  T
Q  443 tccctcaacaa 453  Q
    |||||||||||    
T  33292902 tccctcaacaa 33292912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 33413920 - 33414021
Alignment:
Q  24 caaagagtgtctatccttgaatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagac 123  Q
    ||||||||| ||||| |  || |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||    
T  33413920 caaagagtgcctatcttcaaacagatcaatgattaatgattattatcatttacatgataagtaacaaatgtcaagaattaatgaaacaaacaattcaaac 33414019  T
Q  124 ct 125  Q
    ||    
T  33414020 ct 33414021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 65; E-Value: 8e-28
Query Start/End: Original strand, 678 - 782
Target Start/End: Original strand, 33293090 - 33293194
Alignment:
Q  678 gaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgcct 777  Q
    |||||||||||||||||| | ||||||||||||||  || |||||| ||||||||| |||||| |||||||||||||||||||||||||||||| | |||    
T  33293090 gaatcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcacct 33293189  T
Q  778 tttca 782  Q
    |||||    
T  33293190 tttca 33293194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 60; E-Value: 7e-25
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 33258067 - 33258170
Alignment:
Q  311 aaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 410  Q
    |||||||| |||  ||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  33258067 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 33258166  T
Q  411 agag 414  Q
    ||||    
T  33258167 agag 33258170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 529 - 619
Target Start/End: Original strand, 33292988 - 33293078
Alignment:
Q  529 tggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaattt 619  Q
    |||||||  |||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33292988 tggttttgagaatatcttcaatagatacaaactgaacctgaagaatagcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 115 - 271
Target Start/End: Original strand, 33414090 - 33414254
Alignment:
Q  115 aattcagacctcatctatcctcgatagagatacatatcagtaaaatgtattggcgtctaatcaacatttggttattatga---------tttctgttttc 205  Q
    ||||||| |||||| ||||||| ||| ||||||| |||||||||| || |  ||| ||||||||||||||||||||||||         ||||||||| |    
T  33414090 aattcagtcctcatgtatcctcaatacagatacagatcagtaaaacgtgtccgcgcctaatcaacatttggttattatgaagaagcagatttctgttt-c 33414188  T
Q  206 aaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaaac 271  Q
    ||||||| ||||||||||  | ||||||||||||||||||||||||| | ||||| ||||||||||    
T  33414189 aaaattggtctcactctgccgcatacttcttcctatgaaaatgcaacgattacttctcttgaaaac 33414254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 377 - 449
Target Start/End: Original strand, 33269355 - 33269427
Alignment:
Q  377 aacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctca 449  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||    
T  33269355 aacactgtcatccttaataaaaggctactctagaagagcaagctctcctaacctctttgagatttttccctca 33269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 55; E-Value: 7e-22
Query Start/End: Original strand, 829 - 1011
Target Start/End: Original strand, 9165228 - 9165418
Alignment:
Q  829 agacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggctagaaaactaagactta-------gtttggataaataacctaatta 921  Q
    |||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||  ||| ||| ||  ||       |||||||||||   ||||||||    
T  9165228 agacatttaacaattagaaatcttatgtaaaaattcaaagataggtgaacaggctgcaaacctatgagctatgaccttgtttggataaacgccctaatta 9165327  T
Q  922 aagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaaga--taaaatgaagtcatactgttttcctata 1011  Q
    ||||||| |||||||   |||| |||| || | ||||||||||||||||||||||| ||| |  ||| ||||||||||||||||||||||||    
T  9165328 aagcttataagataagtgctta-catataagtacttatgtataagctatttttataacaaaaggtaagatgaagtcatactgttttcctata 9165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 55; E-Value: 7e-22
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 33351038 - 33351120
Alignment:
Q  43 aatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct 125  Q
    ||||||||||||||| |||||||||||| ||||||  || |||||||||||| ||||||||||||||||||||||||| ||||    
T  33351038 aatagatcaatgattaatgattattatcctttacaatagtagtaacaaatgtcaagaattaatgaaacaaacaattcaaacct 33351120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1309 - 1438
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
Q  1309 aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc 1407  Q
    |||||||||||||||| |||| || ||| ||||||  ||||| |  ||||| ||||||||||||||||| ||||||| | ||||||||| | |   ||||    
T  33385707 aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc 33385806  T
Q  1408 aattgcaacttcttcatcttcaacttgtact 1438  Q
    |||||||||||||||| ||||||||||||||    
T  33385807 aattgcaacttcttcaccttcaacttgtact 33385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 145 - 283
Target Start/End: Original strand, 33351212 - 33351363
Alignment:
Q  145 tacatatcagtaaaatgtattggcgtctaatcaacatttggttattatga---------tttctgttttcaaaa-ttgatctcactctgttgtatacttc 234  Q
    |||| ||||||||||||| |  ||| ||||||||||||||||||||||||         ||||||||||||||| |||||||||||| |  | |||||||    
T  33351212 tacagatcagtaaaatgtgtccgcgcctaatcaacatttggttattatgaagaacaagatttctgttttcaaaaattgatctcactccgcagcatacttc 33351311  T
Q  235 ttcctatgaaaatgca---acaaatacttttcttgaaaactttttaagctat 283  Q
    ||||||||||||||||   |||||||||| |||||||| | || ||||||||    
T  33351312 ttcctatgaaaatgcaaagacaaatacttgtcttgaaagcgttgtaagctat 33351363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 615 - 739
Target Start/End: Original strand, 33280358 - 33280482
Alignment:
Q  615 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 714  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 33280457  T
Q  715 ctcgtcttccggatttcttgtcagc 739  Q
     |  |||||||||||||||||||||    
T  33280458 ttaatcttccggatttcttgtcagc 33280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1022 - 1128
Target Start/End: Complemental strand, 24631970 - 24631864
Alignment:
Q  1022 ataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 1121  Q
    ||||||||||||| ||| | |  ||||||||||| |||||| ||||| ||||||| ||||  ||||||||||| |||||||| ||| ||| |||||||||    
T  24631970 ataagcttttctaaacagcttttggaaataagctaaaaacagcttttatggacatatcatgagttgtttccataaactcttccaaatagtttcacaagtg 24631871  T
Q  1122 ctaatat 1128  Q
    || ||||    
T  24631870 cttatat 24631864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 940 - 1014
Target Start/End: Complemental strand, 29274376 - 29274300
Alignment:
Q  940 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 1014  Q
    ||||||||| || |||||||||||||||||||| ||||||  |||||||||| |||||| | ||||||| |||||||    
T  29274376 cttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagc 29274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1364 - 1423
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
Q  1364 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 1423  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  33281320 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 33281376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 427
Target Start/End: Complemental strand, 31567468 - 31567428
Alignment:
Q  387 tccttaatgaaaggctgctctagaagagcaagctctcctaa 427  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  31567468 tccttaatgaaaggctgctctagaagagaaagctctcctaa 31567428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 736 - 782
Target Start/End: Complemental strand, 28873091 - 28873045
Alignment:
Q  736 cagcggatgagagacccttttttctgaggtatgcttgcgccttttca 782  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttca 28873045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1381 - 1435
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
Q  1381 agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt 1435  Q
    |||||||||| ||||||| || ||||||||||||||  |||||||||||||||||    
T  33416538 agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt 33416592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1364 - 1423
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
Q  1364 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 1423  Q
    ||||||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||    
T  33301947 gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca 33302003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1045 - 1120
Target Start/End: Complemental strand, 281881 - 281808
Alignment:
Q  1045 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 1120  Q
    |||||||||||||||||||||| |   ||||||||||  |||| |||||||| |||| | ||||||||||||||||    
T  281881 ggaaataagctgaaaacaacttata--gacatgtcataagttgcttccattagctctcccaaacagtctcacaagt 281808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 830 - 871
Target Start/End: Original strand, 33282241 - 33282282
Alignment:
Q  830 gacatttaaaaattacaaaccttatgtaagaattcaaagata 871  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33282241 gacatttaaaaattagaaatcttatgtaagaattcaacgata 33282282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 830 - 871
Target Start/End: Original strand, 33398042 - 33398083
Alignment:
Q  830 gacatttaaaaattacaaaccttatgtaagaattcaaagata 871  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33398042 gacatttaaaaattataaatcttatgtaagaattcaacgata 33398083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 830 - 871
Target Start/End: Original strand, 33408952 - 33408993
Alignment:
Q  830 gacatttaaaaattacaaaccttatgtaagaattcaaagata 871  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33408952 gacatttaaaaattataaatcttatgtaagaattcaacgata 33408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 5e-60; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 5e-60
Query Start/End: Original strand, 561 - 782
Target Start/End: Complemental strand, 17447982 - 17447760
Alignment:
Q  561 tgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 660  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| |||||    
T  17447982 tgaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaa 17447883  T
Q  661 ttagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagaga-cccttttttc 759  Q
    ||||| |||  ||| ||| |||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||||| ||||||||||    
T  17447882 ttagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttc 17447783  T
Q  760 tgaggtatgcttgcgccttttca 782  Q
    |||||||||||||||||||||||    
T  17447782 tgaggtatgcttgcgccttttca 17447760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 4e-42
Query Start/End: Original strand, 287 - 453
Target Start/End: Complemental strand, 17445910 - 17445747
Alignment:
Q  287 tgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtca 386  Q
    |||||||||  ||||||||| |||||||||||||||  |||    ||| ||||| ||||||||||||||||||||||| | ||| ||| |||| ||||||    
T  17445910 tgtttctccgggagtgaacctaacaaaacgccgcactttaaa---ctctccaatagcagctatactttgcctcaccaaatatttcactgaaacgctgtca 17445814  T
Q  387 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 453  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  17445813 tccttaatgaaaggctgctctagaagagcaagctctcctaacctctttgagatccttccctcgacaa 17445747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 17446026 - 17445951
Alignment:
Q  193 gatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaa 269  Q
    ||||||||||| |||||||||||||||||||  | ||||||||||||||||||||||||||||||||| ||||||||    
T  17446026 gatttctgttt-caaaattgatctcactctgccgcatacttcttcctatgaaaatgcaacaaatacttgtcttgaaa 17445951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 17446233 - 17446159
Alignment:
Q  51 aatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct 125  Q
    ||||||| |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||| ||||    
T  17446233 aatgattaatgattattatcatttacatgagaagtaacaaatatcaagagttaatcaaacaaacaattcaaacct 17446159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1306 - 1435
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
Q  1306 agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat 1405  Q
    ||||||||||||||||||| |||| ||  || ||||||  |||||||  ||||||| ||||||||||||||| ||||||| |   |||||||| ||  ||    
T  17443503 agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat 17443404  T
Q  1406 gcaattgcaacttcttcatcttcaacttgt 1435  Q
    ||||||||||||||||||  ||||||||||    
T  17443403 gcaattgcaacttcttcacgttcaacttgt 17443374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 518 - 590
Target Start/End: Complemental strand, 17445679 - 17445607
Alignment:
Q  518 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcatt 590  Q
    |||| ||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  17445679 cttcttcacaatggtttcgggaatatcttcaatagatacaaactgaacatgtggacaagcatcaacttgcatt 17445607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1086 - 1151
Target Start/End: Complemental strand, 17443602 - 17443537
Alignment:
Q  1086 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 1151  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 933 - 1014
Target Start/End: Original strand, 34339039 - 34339122
Alignment:
Q  933 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 1014  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||  |||||||||| |||||| ||||||||| |||||||    
T  34339039 ataaacacttatcatataagtgcttatgtataaactttttctatagctaaagataaaataaagtcagactgttttcgtataagc 34339122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 941 - 981
Target Start/End: Original strand, 3102617 - 3102657
Alignment:
Q  941 ttatcataaaattgcttatgtataagctatttttatagcaa 981  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  3102617 ttatcatataactgcttatgtataagctatttttatagcaa 3102657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1046 - 1123
Target Start/End: Complemental strand, 14299663 - 14299588
Alignment:
Q  1046 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 1123  Q
    ||||||||||||||||||  | | |||| |||||||  ||||||||||| |||||||| |||||||| | ||||||||    
T  14299663 gaaataagctgaaaacaa--tgtatggatatgtcataagttgtttccataaactcttccaaacagtccctcaagtgct 14299588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1521 - 1559
Target Start/End: Original strand, 26328079 - 26328117
Alignment:
Q  1521 aagatctacaagggttcaaagacactctgtcaattgtca 1559  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  26328079 aagatctacaagggatcaaagacactttgtcaattgtca 26328117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 953 - 1014
Target Start/End: Complemental strand, 7103615 - 7103554
Alignment:
Q  953 tgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 1014  Q
    |||||||||| || |||| |||||| ||||||||||| |||||| ||||||||  |||||||    
T  7103615 tgcttatgtagaaactatatttataacaagataaaataaagtcaaactgttttaatataagc 7103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 1e-57; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-57
Query Start/End: Original strand, 1450 - 1584
Target Start/End: Complemental strand, 35958792 - 35958658
Alignment:
Q  1450 tgctcgttcactgttaggaaaacttgcatcttctgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctg 1549  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||     
T  35958792 tgctcgttcactgttaggaaaacttgcatcttatgcttatgaagaagcttctcgtgcctatggtgtgtataaagatctacaagagttcaaagacactctc 35958693  T
Q  1550 tcaattgtcagtggtgtactgttggatgctgagtg 1584  Q
    |||||||||||||||||| ||||||||||||||||    
T  35958692 tcaattgtcagtggtgtattgttggatgctgagtg 35958658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 3e-55
Query Start/End: Original strand, 1450 - 1584
Target Start/End: Complemental strand, 35978247 - 35978113
Alignment:
Q  1450 tgctcgttcactgttaggaaaacttgcatcttctgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctg 1549  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||     
T  35978247 tgctcattcactgttaggaaaacttgcatcttatgcttatgaagaagcttctctagcctatggtgtgtataaagatctccaagggttcaaagacactctc 35978148  T
Q  1550 tcaattgtcagtggtgtactgttggatgctgagtg 1584  Q
    |||||||||||||||||| ||||||||||||||||    
T  35978147 tcaattgtcagtggtgtattgttggatgctgagtg 35978113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 3e-55
Query Start/End: Original strand, 1450 - 1584
Target Start/End: Complemental strand, 35999659 - 35999525
Alignment:
Q  1450 tgctcgttcactgttaggaaaacttgcatcttctgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctg 1549  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||     
T  35999659 tgctcattcactgttaggaaaacttgcatcttatgcttatgaagaagcttctctagcctatggtgtgtataaagatctccaagggttcaaagacactctc 35999560  T
Q  1550 tcaattgtcagtggtgtactgttggatgctgagtg 1584  Q
    |||||||||||||||||| ||||||||||||||||    
T  35999559 tcaattgtcagtggtgtattgttggatgctgagtg 35999525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 1456 - 1582
Target Start/End: Original strand, 36216894 - 36217020
Alignment:
Q  1456 ttcactgttaggaaaacttgcatcttctgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaatt 1555  Q
    |||||||||||| |||||||| |||| ||||||||||||||| ||||| ||||| ||||| ||| ||||||| ||| || ||||||| ||||| ||||||    
T  36216894 ttcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaacggatcaaagatactctatcaatt 36216993  T
Q  1556 gtcagtggtgtactgttggatgctgag 1582  Q
    ||||| ||| ||||| | |||||||||    
T  36216994 gtcagaggtctactgctagatgctgag 36217020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 1486 - 1582
Target Start/End: Complemental strand, 35947551 - 35947455
Alignment:
Q  1486 ttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaattgtcagtggtgtactgttggatgctgag 1582  Q
    |||||||||| ||||||| ||||||||||||||| || |||||||| | || | |||||||||| ||||||||||||||||| ||||||||||||||    
T  35947551 ttatgaagaaacttctcgtgcctatggtgtgtatgaacatctacaatgtttgagagacactctggcaattgtcagtggtgtattgttggatgctgag 35947455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 1456 - 1527
Target Start/End: Complemental strand, 35931035 - 35930964
Alignment:
Q  1456 ttcactgttaggaaaacttgcatcttctgcttatgaagaagcttctcgagcctatggtgtgtataaagatct 1527  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  35931035 ttcactattaggaaaacttgcatcttatgcttatgaagaagcttctcgtgcctatgatgtgtataaagatct 35930964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1489 - 1582
Target Start/End: Complemental strand, 36226655 - 36226562
Alignment:
Q  1489 tgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaattgtcagtggtgtactgttggatgctgag 1582  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| || ||||||||||| || ||||||| || ||| | || ||||||||||||    
T  36226655 tgaagaagcttctcgagcctatggtgtgtatgaagatctccaacggatcaaagacactttggcaattgttagaggtcttctattggatgctgag 36226562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1524 - 1584
Target Start/End: Complemental strand, 35926457 - 35926397
Alignment:
Q  1524 atctacaagggttcaaagacactctgtcaattgtcagtggtgtactgttggatgctgagtg 1584  Q
    |||| ||||||| |||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  35926457 atctccaagggtccaaagacactctctcaattgtcagtggtgtattgtcggatgctgagtg 35926397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1494 - 1578
Target Start/End: Original strand, 36220925 - 36221009
Alignment:
Q  1494 aagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaattgtcagtggtgtactgttggatgc 1578  Q
    |||||||||| |||||  |||||||| | ||||| |||||| ||||||||||| ||||||||||||| ||| |||| ||||||||    
T  36220925 aagcttctcgtgcctaccgtgtgtatgatgatctccaagggatcaaagacactttgtcaattgtcagaggtctactattggatgc 36221009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1472 - 1583
Target Start/End: Complemental strand, 35974091 - 35973980
Alignment:
Q  1472 cttgcatcttctgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaattgtcagtggtgtactgt 1571  Q
    ||||| |||| ||| ||||| || ||||||||| | |||||||||||| | ||||||||||   ||||| ||||| | ||||||||||  ||| | ||||    
T  35974091 cttgcttcttatgcctatgacgaggcttctcgaacttatggtgtgtatgatgatctacaagatatcaaaaacactttttcaattgtcataggtcttctgt 35973992  T
Q  1572 tggatgctgagt 1583  Q
    ||||||||||||    
T  35973991 tggatgctgagt 35973980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1472 - 1583
Target Start/End: Complemental strand, 35995503 - 35995392
Alignment:
Q  1472 cttgcatcttctgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaattgtcagtggtgtactgt 1571  Q
    ||||| |||| ||| ||||| || ||||||||| | |||||||||||| | ||||||||||   ||||| ||||| | ||||||||||  ||| | ||||    
T  35995503 cttgcttcttatgcctatgacgaggcttctcgaacttatggtgtgtatgatgatctacaagatatcaaaaacactttttcaattgtcataggtcttctgt 35995404  T
Q  1572 tggatgctgagt 1583  Q
    ||||||||||||    
T  35995403 tggatgctgagt 35995392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1008 - 1121
Target Start/End: Original strand, 3468614 - 3468725
Alignment:
Q  1008 tataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaa 1107  Q
    |||||||  ||||||||| || | ||||| ||| |  ||||||||| || ||||||||| ||  ||||||||||| ||||||||||  |||||| |||||    
T  3468614 tataagcttttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatg--gacatgtcattagttgtttccaacaactctccgaaa 3468711  T
Q  1108 cagtctcacaagtg 1121  Q
    |||||||| |||||    
T  3468712 cagtctcaaaagtg 3468725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 933 - 1014
Target Start/End: Complemental strand, 3610894 - 3610811
Alignment:
Q  933 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 1014  Q
    |||||||||| ||||| || |||||||||||||||||||| || | |  |||||||||||||| || ||||||||  |||||||    
T  3610894 ataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagc 3610811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 941 - 1062
Target Start/End: Complemental strand, 26935696 - 26935573
Alignment:
Q  941 ttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagaca 1038  Q
    |||||||| || ||||| ||| ||||||||||||||| |||  |||||||| | || | | ||||||| ||| ||| |||||||||| || ||||| | |    
T  26935696 ttatcatataagtgcttttgtgtaagctatttttataacaaatgataaaataaggttaaattgttttcatatgagctattttcataatctattctaaaga 26935597  T
Q  1039 acatacggaaataagctgaaaaca 1062  Q
     | || ||||||||||||||||||    
T  26935596 gcttatggaaataagctgaaaaca 26935573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 899 - 977
Target Start/End: Complemental strand, 22388093 - 22388014
Alignment:
Q  899 agtttggataaataacctaattaaa-gcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 977  Q
    |||||||||||| ||| |||||||  ||||| || |||||||||||||||  || |||||||| ||||||||||| ||||    
T  22388093 agtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctata 22388014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1483 - 1557
Target Start/End: Complemental strand, 35982782 - 35982708
Alignment:
Q  1483 tgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaattgt 1557  Q
    |||||||||||| | |||| ||||||||||||||||| ||||| | ||| || ||||||| ||| || |||||||    
T  35982782 tgcttatgaagaggtttctggagcctatggtgtgtatgaagatttccaacggatcaaagatactttggcaattgt 35982708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1483 - 1557
Target Start/End: Complemental strand, 36004194 - 36004120
Alignment:
Q  1483 tgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaattgt 1557  Q
    |||||||||||| | |||| ||||||||||||||||| ||||| | ||| || ||||||| ||| || |||||||    
T  36004194 tgcttatgaagaggtttctggagcctatggtgtgtatgaagatttccaacggatcaaagatactttggcaattgt 36004120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 102; Significance: 6e-50; HSPs: 8)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 102; E-Value: 6e-50
Query Start/End: Original strand, 555 - 782
Target Start/End: Original strand, 2308 - 2537
Alignment:
Q  555 acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttc 653  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  |||    
T  2308 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc 2407  T
Q  654 acttcaattagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccc 752  Q
    |||||||||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| ||||||||||||||||||    
T  2408 acttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccc 2507  T
Q  753 ttttttctgaggtatgcttgcgccttttca 782  Q
    |||||  |||| |||||||||| |||||||    
T  2508 tttttgatgagatatgcttgcggcttttca 2537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 85; E-Value: 9e-40
Query Start/End: Original strand, 915 - 1151
Target Start/End: Original strand, 3802 - 4047
Alignment:
Q  915 ctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctata- 1011  Q
    |||||| ||||||| ||||||| | |||  |||| || ||||||||| ||||||||||||||| |||  |||||| |||||||||||||||||||||||     
T  3802 ctaattcaagcttataagataagcgctttacatataagtgcttatgtgtaagctatttttataacaaaagataaactgaagtcatactgttttcctatat 3901  T
Q  1012 ------agcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcga 1105  Q
          ||| |||||||||||||||||||||||  ||| | |||   |||||||||| ||||| ||||||||||||  |  |||||||| |||||||| |    
T  3902 gctataagctattttcataagcttttctagacagtatatgtaaaatggctgaaaacagcttttatggacatgtcatgagccgtttccataaactcttcca 4001  T
Q  1106 aacagtctcacaagtgctaatatgactgtataagttcaaatacatc 1151  Q
    |||||||||||||||||| |||| | | ||||||||||||||||||    
T  4002 aacagtctcacaagtgcttatatcaatatataagttcaaatacatc 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 612 - 784
Target Start/End: Complemental strand, 15281 - 15114
Alignment:
Q  612 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 711  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 15182  T
Q  712 caactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 784  Q
     | ||    | ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  15181 tagct----tgccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 15114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 60; E-Value: 7e-25
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 2188 - 2291
Alignment:
Q  311 aaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 410  Q
    |||||||| |||  ||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  2188 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 2287  T
Q  411 agag 414  Q
    ||||    
T  2288 agag 2291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 615 - 739
Target Start/End: Complemental strand, 13895 - 13771
Alignment:
Q  615 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 714  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 13796  T
Q  715 ctcgtcttccggatttcttgtcagc 739  Q
     |  |||||||||||||||||||||    
T  13795 ttaatcttccggatttcttgtcagc 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 785 - 871
Target Start/End: Original strand, 3704 - 3791
Alignment:
Q  785 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 871  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| ||||||||||||||||||||||    
T  3704 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagata 3791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #7
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1364 - 1423
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
Q  1364 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 1423  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  12932 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 12876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #8
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 830 - 871
Target Start/End: Complemental strand, 12011 - 11970
Alignment:
Q  830 gacatttaaaaattacaaaccttatgtaagaattcaaagata 871  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  12011 gacatttaaaaattagaaatcttatgtaagaattcaacgata 11970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 9e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 9e-43
Query Start/End: Original strand, 1189 - 1343
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
Q  1189 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga 1288  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| ||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga 30653262  T
Q  1289 aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 1343  Q
    ||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653261 aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 940 - 1062
Target Start/End: Original strand, 11684346 - 11684468
Alignment:
Q  940 cttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaa 1039  Q
    ||||||||| || |||| |||||||||||||||||||| ||| ||| ||   ||| | ||||||||| ||||||| ||||||||||||| | || || |     
T  11684346 cttatcatataagtgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgctggagag 11684445  T
Q  1040 catacggaaataagctgaaaaca 1062  Q
    | |||||||||||| ||||||||    
T  11684446 cttacggaaataagttgaaaaca 11684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1016 - 1081
Target Start/End: Complemental strand, 30653438 - 30653373
Alignment:
Q  1016 attttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 1081  Q
    ||||||||||||||||||||||| | || |||||||||||||||||| ||||| || |||||||||    
T  30653438 attttcataagcttttctagacagcttatggaaataagctgaaaacagcttttatgaacatgtcat 30653373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 933 - 1014
Target Start/End: Complemental strand, 32059742 - 32059660
Alignment:
Q  933 ataaacacttatcataaaattgcttatgtataagctatttttatagc-aagataaaatgaagtcatactgttttcctataagc 1014  Q
    ||||| |||||||||| || |||||||||||||||| ||||| || | |||||||||| |||||| ||||||||| |||||||    
T  32059742 ataaatacttatcatataagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagc 32059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 933 - 977
Target Start/End: Original strand, 10391269 - 10391313
Alignment:
Q  933 ataaacacttatcataaaattgcttatgtataagctatttttata 977  Q
    |||||||||||||||| || |||||| ||||||||||||||||||    
T  10391269 ataaacacttatcatataagtgcttacgtataagctatttttata 10391313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1070 - 1121
Target Start/End: Original strand, 11457158 - 11457209
Alignment:
Q  1070 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 1121  Q
    ||||||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  11457158 tggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtg 11457209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 933 - 972
Target Start/End: Complemental strand, 29115367 - 29115328
Alignment:
Q  933 ataaacacttatcataaaattgcttatgtataagctattt 972  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  29115367 ataaacatttatcataaaagtgcttatgtataagctattt 29115328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1045 - 1123
Target Start/End: Complemental strand, 13000457 - 13000381
Alignment:
Q  1045 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 1123  Q
    ||||||||||||||||||||||  |||||||||||||  |||||| |||| |||||||  ||| |||||||||||||||    
T  13000457 ggaaataagctgaaaacaactt--gtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgct 13000381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 938 - 1006
Target Start/End: Original strand, 26717178 - 26717246
Alignment:
Q  938 cacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttc 1006  Q
    ||||||||||| || ||||| || |||||||| ||||||| ||||||||||| |||||| ||| |||||    
T  26717178 cacttatcatataagtgcttctgaataagctaattttataacaagataaaataaagtcaaactattttc 26717246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 942 - 1028
Target Start/End: Original strand, 5290566 - 5290649
Alignment:
Q  942 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagct 1028  Q
    ||||||| || |||||||||||||||||||| |||| ||| |||||||  ||||| ||||||||| | ||||| || ||||||||||    
T  5290566 tatcatacaagtgcttatgtataagctatttctataacaa-ataaaat--agtcaaactgttttcatgtaagctatattcataagct 5290649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 933 - 996
Target Start/End: Complemental strand, 26716590 - 26716527
Alignment:
Q  933 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 996  Q
    |||||||||||| ||| || ||||||||||||||||| || |||| |||||| |||| ||||||    
T  26716590 ataaacacttattatataagtgcttatgtataagctacttctataacaagattaaataaagtca 26716527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1045 - 1123
Target Start/End: Complemental strand, 30191174 - 30191098
Alignment:
Q  1045 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 1123  Q
    ||||||||||||||||||| |||||   |||||||||  ||||||||||| | |||| | ||||||||| |||||||||    
T  30191174 ggaaataagctgaaaacaagttttga--acatgtcataagttgtttccataagctctcccaaacagtctaacaagtgct 30191098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 980 - 1066
Target Start/End: Complemental strand, 10079168 - 10079082
Alignment:
Q  980 aagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaactt 1066  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||| |||| |||| || |   || ||||| ||||| ||||||||||    
T  10079168 aagataaaatgaagtcaaactgttttcgtataagctgttttcatgagctattctggaaagtttatggaaagaagcttaaaacaactt 10079082  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1017 - 1066
Target Start/End: Original strand, 30389108 - 30389157
Alignment:
Q  1017 ttttcataagcttttctagacaacatacggaaataagctgaaaacaactt 1066  Q
    |||||||||||||| ||||| ||| || | ||||||||||||||||||||    
T  30389108 ttttcataagctttcctagagaacttatgaaaataagctgaaaacaactt 30389157  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 940 - 1014
Target Start/End: Complemental strand, 34788574 - 34788498
Alignment:
Q  940 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 1014  Q
    ||||||||| || |||||| |||||||||||||||||  |  |||||||||| |||||| ||||||| | |||||||    
T  34788574 cttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagc 34788498  T

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Target: chr3 (Bit Score: 38; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1045 - 1121
Target Start/End: Original strand, 43115093 - 43115167
Alignment:
Q  1045 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 1121  Q
    ||||||||||||||||||| || ||  ||||||||||  ||||||||||| |||||||| ||||| |||||||||||    
T  43115093 ggaaataagctgaaaacaagttatg--gacatgtcataagttgtttccataaactcttccaaacaatctcacaagtg 43115167  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 933 - 1011
Target Start/End: Original strand, 38462197 - 38462277
Alignment:
Q  933 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctata 1011  Q
    |||||||||||||||| || || |||| |||||||||||| |||| |  |||||||||| |||||| ||||||||| ||||    
T  38462197 ataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 940 - 1013
Target Start/End: Original strand, 22232749 - 22232824
Alignment:
Q  940 cttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataag 1013  Q
    ||||||||| || |||| ||||||||||||||| |||| |||  |||||||| |||||| ||||||||| ||||||    
T  22232749 cttatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 924 - 1006
Target Start/End: Complemental strand, 3016011 - 3015928
Alignment:
Q  924 gcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttc 1006  Q
    ||||| || |||||||||||| ||| || ||||||||||| |  ||||| |||| ||| ||||||||||||||| |||||||||    
T  3016011 gcttataacataaacacttattatataagtgcttatgtattaattatttctataacaaagataaaatgaagtcaaactgttttc 3015928  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1045 - 1123
Target Start/End: Original strand, 37273171 - 37273247
Alignment:
Q  1045 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 1123  Q
    ||||||||| |||||||||||| ||  ||||||||||  ||||||||||| | |||| | |||||||||||| ||||||    
T  37273171 ggaaataagttgaaaacaacttatg--gacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1048 - 1144
Target Start/End: Original strand, 24624250 - 24624344
Alignment:
Q  1048 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaa 1144  Q
    |||||||||||||||   ||| ||||||||||||  | ||||| ||| | |||||| ||||||||| |||||||||||| ||| |  ||||||||||    
T  24624250 aataagctgaaaacag--tttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaa 24624344  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 943 - 996
Target Start/End: Original strand, 44207697 - 44207750
Alignment:
Q  943 atcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 996  Q
    |||||| || ||||||| | ||||||||||||||||||||||||||| ||||||    
T  44207697 atcatacaagtgcttatatgtaagctatttttatagcaagataaaataaagtca 44207750  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1072 - 1123
Target Start/End: Original strand, 15581316 - 15581367
Alignment:
Q  1072 gacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 1123  Q
    ||||||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  15581316 gacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgct 15581367  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 955 - 1028
Target Start/End: Complemental strand, 21410 - 21335
Alignment:
Q  955 cttatgtataagctatttttatag--caagataaaatgaagtcatactgttttcctataagcgattttcataagct 1028  Q
    ||||||||||||||||||||||||   |||||||||| |||| | | ||||||| |||||||  ||||||||||||    
T  21410 cttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagct 21335  T

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Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 942 - 996
Target Start/End: Complemental strand, 32920543 - 32920489
Alignment:
Q  942 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 996  Q
    ||||||| || || ||||| |||||||||||||||| ||||||||||| ||||||    
T  32920543 tatcatataagtgtttatggataagctatttttataacaagataaaataaagtca 32920489  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 939 - 1006
Target Start/End: Original strand, 47970240 - 47970309
Alignment:
Q  939 acttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 1006  Q
    |||| ||||| || |||||||||||||||||||| |||| |  ||||||||||||||||| ||| |||||    
T  47970240 acttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttc 47970309  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 956 - 1026
Target Start/End: Complemental strand, 55437415 - 55437345
Alignment:
Q  956 ttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataag 1026  Q
    |||| |||||||||||| |||| ||| ||||||| |||||| | | ||||| ||||||| |||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaattattttcatataagctattttcataag 55437345  T

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