View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13949_low_11 (Length: 266)

Name: NF13949_low_11
Description: NF13949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13949_low_11
NF13949_low_11
[»] chr3 (14 HSPs)
chr3 (181-266)||(50151805-50151890)
chr3 (8-94)||(50151645-50151731)
chr3 (29-94)||(22461146-22461211)
chr3 (31-94)||(13595395-13595458)
chr3 (183-233)||(42677835-42677885)
chr3 (29-79)||(50151807-50151857)
chr3 (183-231)||(13595410-13595458)
chr3 (183-234)||(22461161-22461212)
chr3 (186-232)||(38400986-38401032)
chr3 (183-233)||(50151666-50151716)
chr3 (193-234)||(22524030-22524071)
chr3 (28-89)||(25095628-25095689)
chr3 (29-94)||(42677835-42677899)
chr3 (181-233)||(13595265-13595317)
[»] chr5 (5 HSPs)
chr5 (181-235)||(2825743-2825797)
chr5 (183-233)||(34818406-34818456)
chr5 (29-94)||(34818406-34818471)
chr5 (190-233)||(33923197-33923240)
chr5 (29-72)||(33923197-33923240)
[»] chr2 (6 HSPs)
chr2 (29-94)||(24745854-24745919)
chr2 (183-233)||(24745869-24745919)
chr2 (181-232)||(24745725-24745776)
chr2 (183-230)||(10836714-10836761)
chr2 (32-94)||(10836714-10836776)
chr2 (193-233)||(41828100-41828140)
[»] chr1 (15 HSPs)
chr1 (181-233)||(8622365-8622417)
chr1 (29-94)||(8622220-8622286)
chr1 (29-94)||(27666437-27666501)
chr1 (183-233)||(8622220-8622271)
chr1 (27-94)||(11828025-11828092)
chr1 (193-234)||(1750142-1750184)
chr1 (184-233)||(27666452-27666501)
chr1 (29-94)||(27760404-27760469)
chr1 (28-76)||(8622370-8622418)
chr1 (183-233)||(11828040-11828090)
chr1 (187-229)||(27666309-27666350)
chr1 (27-77)||(27760267-27760317)
chr1 (33-94)||(27581698-27581759)
chr1 (184-233)||(27760420-27760469)
chr1 (189-221)||(1749998-1750030)
[»] chr7 (7 HSPs)
chr7 (30-94)||(1705782-1705846)
chr7 (181-233)||(42310374-42310426)
chr7 (29-94)||(42310231-42310296)
chr7 (184-233)||(42310231-42310280)
chr7 (181-233)||(1705924-1705976)
chr7 (183-232)||(1705782-1705831)
chr7 (181-233)||(40745978-40746030)
[»] chr4 (8 HSPs)
chr4 (29-94)||(12096116-12096184)
chr4 (31-94)||(50392110-50392173)
chr4 (32-94)||(43413257-43413319)
chr4 (183-231)||(50392125-50392173)
chr4 (183-233)||(12096131-12096184)
chr4 (183-230)||(43413257-43413304)
chr4 (62-94)||(30680733-30680765)
chr4 (181-233)||(50391980-50392032)
[»] chr8 (6 HSPs)
chr8 (29-94)||(14507512-14507577)
chr8 (183-230)||(41872748-41872795)
chr8 (186-232)||(10475235-10475281)
chr8 (29-94)||(10475364-10475429)
chr8 (29-94)||(21636569-21636634)
chr8 (181-233)||(14507382-14507434)
[»] chr6 (2 HSPs)
chr6 (38-94)||(30258645-30258701)
chr6 (183-224)||(30258645-30258686)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 50151805 - 50151890
Alignment:
Q  181 gtgtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctcatggccaaacactcatatttgagcacaaatttc 266  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50151805 gtgtatgtgcctaaaattgaagtgttggatatgtgtccaaccaagactttctcatggccaaacactcatatttgagcacaaatttc 50151890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 50151645 - 50151731
Alignment:
Q  8 attattctcccataaacaaaggagaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  50151645 attattctcccataaacagaggagaaagtcttggttgggcacatctccaacatttcaattttgggcacatactcacataaaactaac 50151731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 22461211 - 22461146
Alignment:
Q  29 gagaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||||| ||||||| || | |||||  |||||||||||||||||||||||||||||||||    
T  22461211 gagaaagtcttgcttgggcatatatccaacacctcaattttaggcacatactcacataaaactaac 22461146  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 13595458 - 13595395
Alignment:
Q  31 gaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||| ||||||||||   |||||  |||||||| ||||||||||||||||||||||||    
T  13595458 gaaagtcttgcttgggcacatacccaacacctcaattttgggcacatactcacataaaactaac 13595395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 42677885 - 42677835
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    ||||||||| |||||||| |||||||||||||| |||| ||||||||||||    
T  42677885 gtatgtgcccaaaattgaggtgttgggtatgtgcccaaacaagactttctc 42677835  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 50151857 - 50151807
Alignment:
Q  29 gagaaagtcttggttgggcacatcttcaacatttcaattttaggcacatac 79  Q
    ||||||||||||||||| ||||| | ||||| |||||||||||||||||||    
T  50151857 gagaaagtcttggttggacacatatccaacacttcaattttaggcacatac 50151807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 13595410 - 13595458
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttc 231  Q
    ||||||||| |||||||| |||||||||||||| |||| ||||||||||    
T  13595410 gtatgtgcccaaaattgaggtgttgggtatgtgcccaagcaagactttc 13595458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 22461161 - 22461212
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctca 234  Q
    |||||||||||||||||| ||||||| ||| || |||| |||||||||||||    
T  22461161 gtatgtgcctaaaattgaggtgttggatatatgcccaagcaagactttctca 22461212  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 38401032 - 38400986
Alignment:
Q  186 tgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttct 232  Q
    |||||| ||||||||||||||| ||||||| |||||||| |||||||    
T  38401032 tgtgccgaaaattgaagtgttgagtatgtgcccaaccaaaactttct 38400986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 50151716 - 50151666
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    ||||||||| ||||||||| ||||||  ||||| |||||||||||||||||    
T  50151716 gtatgtgcccaaaattgaaatgttggagatgtgcccaaccaagactttctc 50151666  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 22524071 - 22524030
Alignment:
Q  193 aaaattgaagtgttgggtatgtgtccaaccaagactttctca 234  Q
    |||||||||||||| ||| |||| ||||||||||||||||||    
T  22524071 aaaattgaagtgttaggtttgtgcccaaccaagactttctca 22524030  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 25095628 - 25095689
Alignment:
Q  28 ggagaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaa 89  Q
    ||||||||||||| |||||||||| | |||||  ||||||||  ||||||| ||||||||||    
T  25095628 ggagaaagtcttgcttgggcacatatgcaacacctcaattttgagcacatattcacataaaa 25095689  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 42677835 - 42677899
Alignment:
Q  29 gagaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||||| ||||||||||   |||||  |||||||| |||||||||||| |||||||||||    
T  42677835 gagaaagtcttgtttgggcacatacccaacacctcaattttgggcacatactca-ataaaactaac 42677899  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 13595317 - 13595265
Alignment:
Q  181 gtgtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    |||| |||||| |||||||| ||||| ||| |||| |||||||||||||||||    
T  13595317 gtgtgtgtgcccaaaattgaggtgttaggtttgtgcccaaccaagactttctc 13595265  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 2825797 - 2825743
Alignment:
Q  181 gtgtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctcat 235  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2825797 gtgtgtgtgtctaaaattgaagtgttgggtatgtgtccaaccaagactttctcat 2825743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 34818456 - 34818406
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34818456 gtatgtgtctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 34818406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 34818406 - 34818471
Alignment:
Q  29 gagaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    ||||||||||||||||| |||||   ||||| ||||||||||| ||||||||||||||||||||||    
T  34818406 gagaaagtcttggttggacacatacccaacacttcaattttagacacatactcacataaaactaac 34818471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 33923240 - 33923197
Alignment:
Q  190 cctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    |||||||||||||||||| ||||||| |||||||||||||||||    
T  33923240 cctaaaattgaagtgttgagtatgtgcccaaccaagactttctc 33923197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 33923197 - 33923240
Alignment:
Q  29 gagaaagtcttggttgggcacatcttcaacatttcaattttagg 72  Q
    |||||||||||||||||||||||  |||||| ||||||||||||    
T  33923197 gagaaagtcttggttgggcacatactcaacacttcaattttagg 33923240  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 24745919 - 24745854
Alignment:
Q  29 gagaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||||||||||||||||   ||||| ||||||||| ||||||||||||||||||||||||    
T  24745919 gagaaagtcttggttgggcacatacccaacacttcaattttgggcacatactcacataaaactaac 24745854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 24745869 - 24745919
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  24745869 gtatgtgcccaaaattgaagtgttgggtatgtgcccaaccaagactttctc 24745919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 24745776 - 24745725
Alignment:
Q  181 gtgtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttct 232  Q
    |||| ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  24745776 gtgtgtgtgcctaaaattgaagtgtttggtatgtgcccaaccaagactttct 24745725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 10836761 - 10836714
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagacttt 230  Q
    ||||||||| |||||||| |||||||||||||| |||| |||||||||    
T  10836761 gtatgtgcccaaaattgaggtgttgggtatgtgcccaagcaagacttt 10836714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 10836714 - 10836776
Alignment:
Q  32 aaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    ||||||||| ||||||||||   |||||  |||||||| ||||||||||||||||||| ||||    
T  10836714 aaagtcttgcttgggcacatacccaacacctcaattttgggcacatactcacataaaattaac 10836776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 41828100 - 41828140
Alignment:
Q  193 aaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    |||||||||||||| ||| |||||||||| |||||||||||    
T  41828100 aaaattgaagtgttaggtttgtgtccaacgaagactttctc 41828140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 8622365 - 8622417
Alignment:
Q  181 gtgtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  8622365 gtgtgtgtgcctaaaattgaagtgttgggtatgtgcccaaccaagactttctc 8622417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 8622220 - 8622286
Alignment:
Q  29 gagaaagtcttggttggg-cacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||||||||||| |||||   ||||| ||||||||| ||||||||||||||||||||||||    
T  8622220 gagaaagtcttggttggggcacatacccaacacttcaattttgggcacatactcacataaaactaac 8622286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 27666501 - 27666437
Alignment:
Q  29 gagaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||| |||||||||||||| | ||||| ||||||||| |||||||| |||||||||||||||    
T  27666501 gagaaagttttggttgggcacatatccaacacttcaattttgggcacata-tcacataaaactaac 27666437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 8622271 - 8622220
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgggtatgtg-tccaaccaagactttctc 233  Q
    ||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  8622271 gtatgtgcccaaaattgaagtgttgggtatgtgccccaaccaagactttctc 8622220  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 11828092 - 11828025
Alignment:
Q  27 aggagaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||||||| ||||||| ||   |||||  |||||||| ||||||||||||||||||||||||    
T  11828092 aggagaaagtcttgcttgggcagatacccaacacctcaattttgggcacatactcacataaaactaac 11828025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 1750142 - 1750184
Alignment:
Q  193 aaaattgaagtgtt-gggtatgtgtccaaccaagactttctca 234  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  1750142 aaaattgaagtgtttgggtatgtgtccaaccaagactttctca 1750184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 27666452 - 27666501
Alignment:
Q  184 tatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    |||||||| |||||||||||||||| |||||| |||||||| ||||||||    
T  27666452 tatgtgcccaaaattgaagtgttggatatgtgcccaaccaaaactttctc 27666501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 27760469 - 27760404
Alignment:
Q  29 gagaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||||||||||||||||   |||||| ||||||||  ||||||| ||| |||||||||||    
T  27760469 gagaaagtcttggttgggcacatacccaacatatcaattttgagcacatattcagataaaactaac 27760404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 8622418 - 8622370
Alignment:
Q  28 ggagaaagtcttggttgggcacatcttcaacatttcaattttaggcaca 76  Q
    ||||||||||||||||||||||||   ||||| ||||||||||||||||    
T  8622418 ggagaaagtcttggttgggcacatacccaacacttcaattttaggcaca 8622370  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 11828040 - 11828090
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    ||||||||| |||||||| ||||||||||| || |||| ||||||||||||    
T  11828040 gtatgtgcccaaaattgaggtgttgggtatctgcccaagcaagactttctc 11828090  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 27666350 - 27666309
Alignment:
Q  187 gtgcctaaaattgaagtgttgggtatgtgtccaaccaagactt 229  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  27666350 gtgcctaaaattgaagtgtt-ggtatgtgtccaagcaagactt 27666309  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 27760267 - 27760317
Alignment:
Q  27 aggagaaagtcttggttgggcacatcttcaacatttcaattttaggcacat 77  Q
    |||||||||||||||||| | |||| | |||||||| ||||||||||||||    
T  27760267 aggagaaagtcttggttgtgtacatatccaacattttaattttaggcacat 27760317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 27581759 - 27581698
Alignment:
Q  33 aagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||| |||||||||| | |||||  |||||||| | ||||||||||||||||| ||||    
T  27581759 aagtcttgcttgggcacatatccaacacctcaattttggacacatactcacataaaattaac 27581698  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 27760420 - 27760469
Alignment:
Q  184 tatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    |||||||  ||||||||  ||||||||||||| |||||||||||||||||    
T  27760420 tatgtgctcaaaattgatatgttgggtatgtgcccaaccaagactttctc 27760469  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 1750030 - 1749998
Alignment:
Q  189 gcctaaaattgaagtgttgggtatgtgtccaac 221  Q
    ||||||||||||||||||||||||||| |||||    
T  1750030 gcctaaaattgaagtgttgggtatgtgcccaac 1749998  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 1705782 - 1705846
Alignment:
Q  30 agaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    ||||||||||| ||| |||||| | |||||  |||||||||||||||||||||||||||||||||    
T  1705782 agaaagtcttgcttgagcacatatccaacacctcaattttaggcacatactcacataaaactaac 1705846  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 42310374 - 42310426
Alignment:
Q  181 gtgtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    |||||||||||||||||||| ||||| ||| | ||||||||||||||||||||    
T  42310374 gtgtatgtgcctaaaattgaggtgttaggtttctgtccaaccaagactttctc 42310426  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 42310231 - 42310296
Alignment:
Q  29 gagaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||||| ||||||||||   |||||  |||||||| |||||||| |||||||||||||||    
T  42310231 gagaaagtcttgcttgggcacatacccaacacctcaattttgggcacatattcacataaaactaac 42310296  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 42310280 - 42310231
Alignment:
Q  184 tatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    |||||||| |||||||| |||||||||||||| |||| ||||||||||||    
T  42310280 tatgtgcccaaaattgaggtgttgggtatgtgcccaagcaagactttctc 42310231  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 1705924 - 1705976
Alignment:
Q  181 gtgtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    |||| |||||| |||||||||||||| ||| |||| |||||||||||||||||    
T  1705924 gtgtgtgtgcccaaaattgaagtgttaggtttgtgcccaaccaagactttctc 1705976  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 1705831 - 1705782
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttct 232  Q
    |||||||||||||||||| ||||||| ||||||  ||| |||||||||||    
T  1705831 gtatgtgcctaaaattgaggtgttggatatgtgctcaagcaagactttct 1705782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 40745978 - 40746030
Alignment:
Q  181 gtgtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    |||| |||||| |||||||| ||||| ||| |||| |||||||||||||||||    
T  40745978 gtgtgtgtgcccaaaattgaggtgttaggtttgtgcccaaccaagactttctc 40746030  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 12096184 - 12096116
Alignment:
Q  29 gagaaagtcttggttgggcacat---cttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||||||||||||||||   |  |||||  |||||||||||||||||||||||||||||||||    
T  12096184 gagaaagtcttggttgggcacatacccaccaacacctcaattttaggcacatactcacataaaactaac 12096116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 50392173 - 50392110
Alignment:
Q  31 gaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||| ||||||||||   |||||  |||||||| ||||||||||||||||||||||||    
T  50392173 gaaagtcttgcttgggcacatacccaacacctcaattttgggcacatactcacataaaactaac 50392110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 43413257 - 43413319
Alignment:
Q  32 aaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    ||||||||| || |||||||   ||||| ||||||||| ||||||||||||||||||||||||    
T  43413257 aaagtcttgcttaggcacatacccaacacttcaattttgggcacatactcacataaaactaac 43413319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 50392125 - 50392173
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttc 231  Q
    ||||||||| |||||||| |||||||||||||| |||| ||||||||||    
T  50392125 gtatgtgcccaaaattgaggtgttgggtatgtgcccaagcaagactttc 50392173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 12096131 - 12096184
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgg---gtatgtgtccaaccaagactttctc 233  Q
    |||||||||||||||||| |||||||   ||||||| |||||||||||||||||    
T  12096131 gtatgtgcctaaaattgaggtgttggtgggtatgtgcccaaccaagactttctc 12096184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 43413304 - 43413257
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagacttt 230  Q
    ||||||||| ||||||||||||||||||||||| | || |||||||||    
T  43413304 gtatgtgcccaaaattgaagtgttgggtatgtgcctaagcaagacttt 43413257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 30680733 - 30680765
Alignment:
Q  62 tcaattttaggcacatactcacataaaactaac 94  Q
    |||||||| ||||||||||||||||||||||||    
T  30680733 tcaattttgggcacatactcacataaaactaac 30680765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 50392032 - 50391980
Alignment:
Q  181 gtgtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    |||| |||||| |||||||| ||||| ||| |||| |||||||||||||||||    
T  50392032 gtgtgtgtgcccaaaattgaggtgttaggtttgtgcccaaccaagactttctc 50391980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 14507577 - 14507512
Alignment:
Q  29 gagaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||||| ||||||| ||  ||||||  ||||| || ||||||||||||||||||||||||    
T  14507577 gagaaagtcttgtttgggcatatactcaacacctcaatgttgggcacatactcacataaaactaac 14507512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 41872748 - 41872795
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagacttt 230  Q
    |||||||| ||||||| | |||||| ||||||||||||||||||||||    
T  41872748 gtatgtgcttaaaattaaggtgttgcgtatgtgtccaaccaagacttt 41872795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 10475281 - 10475235
Alignment:
Q  186 tgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttct 232  Q
    |||||| |||||| ||||||| ||| |||||||||||||||||||||    
T  10475281 tgtgcccaaaattaaagtgttaggtttgtgtccaaccaagactttct 10475235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 10475429 - 10475364
Alignment:
Q  29 gagaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||||  ||||||||||   |||||| |||||||| |||| ||||||||| |||||||||    
T  10475429 gagaaagtcttccttgggcacatacccaacatctcaattttgggcatatactcacacaaaactaac 10475364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 21636634 - 21636569
Alignment:
Q  29 gagaaagtcttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||||||||||  ||||   |||||| ||||||||  |||| ||||||||||||||||||    
T  21636634 gagaaagtcttggttggctacatacccaacatatcaattttgagcacgtactcacataaaactaac 21636569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 14507434 - 14507382
Alignment:
Q  181 gtgtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaagactttctc 233  Q
    |||| |||||| |||||||| ||||| ||| |||| |||||||||||||||||    
T  14507434 gtgtgtgtgcccaaaattgaggtgttaggtttgtgcccaaccaagactttctc 14507382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 30258645 - 30258701
Alignment:
Q  38 ttggttgggcacatcttcaacatttcaattttaggcacatactcacataaaactaac 94  Q
    |||||||||||||| | ||||| || ||||||||||||||||||| |||||| ||||    
T  30258645 ttggttgggcacatatccaacactttaattttaggcacatactcatataaaattaac 30258701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 30258686 - 30258645
Alignment:
Q  183 gtatgtgcctaaaattgaagtgttgggtatgtgtccaaccaa 224  Q
    |||||||||||||||| ||||||||| |||||| ||||||||    
T  30258686 gtatgtgcctaaaattaaagtgttggatatgtgcccaaccaa 30258645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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