View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13949_low_12 (Length: 255)

Name: NF13949_low_12
Description: NF13949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13949_low_12
NF13949_low_12
[»] chr7 (1 HSPs)
chr7 (14-255)||(4042960-4043202)
[»] chr1 (2 HSPs)
chr1 (11-64)||(6138399-6138453)
chr1 (15-64)||(52022332-52022381)
[»] chr5 (2 HSPs)
chr5 (11-64)||(35429769-35429823)
chr5 (11-64)||(41341242-41341296)
[»] chr3 (3 HSPs)
chr3 (11-64)||(43979422-43979476)
chr3 (11-64)||(17730928-17730983)
chr3 (11-64)||(19032159-19032214)
[»] chr6 (1 HSPs)
chr6 (11-64)||(32342288-32342341)
[»] chr4 (1 HSPs)
chr4 (11-64)||(31322820-31322873)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 4043202 - 4042960
Alignment:
Q  14 aatataacatggaaactccaaaactagagaaaaaccacgaccattgtctaacgaccagagaataacaccatgtaaatattgttacagcatataaattact 113  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4043202 aatataacatggaaactccaaaactagagaaaaaccacaaccattgtctaacgaccagagaataacaccatgtaaatattgttacagcatataaattact 4043103  T
Q  114 ttcgaacacccaccgg-ccccaatacattcataccctccaaacgcatgcctaactacatctcacaacactcttagacaatagtataagnnnnnnnngaaa 212  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||    
T  4043102 ttcaaacacccaccggcccccaatacattcataccctccaaacgcatgcctaactacatctcacaacactcttagacaatagtataagaaaaaaaagaaa 4043003  T
Q  213 agagtcaaatataaatttaaagtgtttttgacttgtgcatctt 255  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4043002 agagtcaaatataaatttaaagtgtttttgacttgtgcatctt 4042960  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 6138453 - 6138399
Alignment:
Q  11 aagaatataacatggaaactccaaaactagaga-aaaaccacgaccattgtctaa 64  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||    
T  6138453 aagaatataacgtggaaactccaaaactagagaaaaaaccacgaccgttgtctaa 6138399  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 52022381 - 52022332
Alignment:
Q  15 atataacatggaaactccaaaactagagaaaaaccacgaccattgtctaa 64  Q
    ||||||| |||||||||||||||   |||||||||| |||||||||||||    
T  52022381 atataacgtggaaactccaaaaccgaagaaaaaccatgaccattgtctaa 52022332  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 35429769 - 35429823
Alignment:
Q  11 aagaatataacatggaaactccaaaactaga-gaaaaaccacgaccattgtctaa 64  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||| || |||||    
T  35429769 aagaatataacgtggaaactccaaaactagaggaaaaaccacgaccgttatctaa 35429823  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 41341296 - 41341242
Alignment:
Q  11 aagaatataacatggaaactccaaaactaga-gaaaaaccacgaccattgtctaa 64  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||||    
T  41341296 aagaatataacatggaaactccaaaaccagaggaaaaaccatgaccgttgtctaa 41341242  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 43979476 - 43979422
Alignment:
Q  11 aagaatataacatggaaactccaaaactagag-aaaaaccacgaccattgtctaa 64  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||| || |||||    
T  43979476 aagaatataacgtggaaactccaaaactggagaaaaaaccacgaccgttatctaa 43979422  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 17730928 - 17730983
Alignment:
Q  11 aagaatataacatggaaactccaaaactagag--aaaaaccacgaccattgtctaa 64  Q
    ||||||||||| |||||||||||||||  |||  ||||||||||||| ||||||||    
T  17730928 aagaatataacgtggaaactccaaaaccggaggaaaaaaccacgaccgttgtctaa 17730983  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 19032159 - 19032214
Alignment:
Q  11 aagaatataacatggaaactccaaaactagag--aaaaaccacgaccattgtctaa 64  Q
    ||||||||||| |||||||||||||||  |||  ||||||||||||| ||||||||    
T  19032159 aagaatataacgtggaaactccaaaaccggaggaaaaaaccacgaccgttgtctaa 19032214  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 32342341 - 32342288
Alignment:
Q  11 aagaatataacatggaaactccaaaactagagaaaaaccacgaccattgtctaa 64  Q
    ||||||||||| |||||||||||||| | |||||||||||| | | ||||||||    
T  32342341 aagaatataacgtggaaactccaaaattggagaaaaaccactatcgttgtctaa 32342288  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 31322873 - 31322820
Alignment:
Q  11 aagaatataacatggaaactccaaaactagagaaaaaccacgaccattgtctaa 64  Q
    ||||||||||| ||||||||||||||   |||||||||||||||  ||||||||    
T  31322873 aagaatataacgtggaaactccaaaatcggagaaaaaccacgactgttgtctaa 31322820  T

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