View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13949_low_4 (Length: 477)

Name: NF13949_low_4
Description: NF13949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13949_low_4
NF13949_low_4
[»] chr3 (23 HSPs)
chr3 (125-467)||(47935293-47935635)
chr3 (270-467)||(47928004-47928201)
chr3 (270-467)||(47946580-47946777)
chr3 (270-338)||(47918242-47918310)
chr3 (51-123)||(54308454-54308526)
chr3 (51-124)||(18745345-18745418)
chr3 (51-119)||(18744625-18744693)
chr3 (77-124)||(20807937-20807984)
chr3 (77-127)||(20808608-20808658)
chr3 (77-124)||(4706957-4707004)
chr3 (75-124)||(15287567-15287616)
chr3 (77-122)||(47677523-47677568)
chr3 (77-126)||(49350271-49350320)
chr3 (72-124)||(55323-55375)
chr3 (53-133)||(36540008-36540088)
chr3 (82-126)||(49349674-49349718)
chr3 (77-124)||(54751796-54751843)
chr3 (74-124)||(3584005-3584055)
chr3 (77-123)||(9830573-9830619)
chr3 (82-124)||(47571196-47571238)
chr3 (82-124)||(53344017-53344059)
chr3 (76-125)||(43454161-43454210)
chr3 (82-126)||(47571945-47571989)
[»] chr8 (19 HSPs)
chr8 (20-124)||(33322147-33322251)
chr8 (30-123)||(33321498-33321591)
chr8 (77-126)||(16911047-16911096)
chr8 (73-124)||(4402284-4402335)
chr8 (82-124)||(202577-202619)
chr8 (82-124)||(317414-317456)
chr8 (75-124)||(26847720-26847769)
chr8 (72-124)||(19220913-19220965)
chr8 (76-124)||(26847097-26847145)
chr8 (77-124)||(22632969-22633016)
chr8 (77-124)||(32339948-32339995)
chr8 (73-124)||(35347665-35347716)
chr8 (77-123)||(22632323-22632369)
chr8 (82-124)||(40599887-40599929)
chr8 (82-124)||(42094009-42094051)
chr8 (55-119)||(203460-203524)
chr8 (55-119)||(318297-318361)
chr8 (76-124)||(5434032-5434080)
chr8 (76-124)||(36403025-36403073)
[»] chr5 (17 HSPs)
chr5 (18-124)||(29594906-29595012)
chr5 (30-124)||(29595548-29595642)
chr5 (54-124)||(27345897-27345967)
chr5 (76-124)||(35524122-35524170)
chr5 (26-89)||(7806457-7806522)
chr5 (21-67)||(7807065-7807111)
chr5 (76-124)||(23253486-23253534)
chr5 (77-125)||(24565572-24565620)
chr5 (77-125)||(24606608-24606656)
chr5 (76-124)||(39937906-39937954)
chr5 (73-124)||(39466885-39466936)
chr5 (82-124)||(2029053-2029095)
chr5 (70-124)||(16195123-16195177)
chr5 (82-124)||(33086729-33086771)
chr5 (82-124)||(40372166-40372208)
chr5 (55-120)||(13541366-13541431)
chr5 (77-129)||(18925183-18925235)
[»] chr7 (16 HSPs)
chr7 (18-126)||(3315405-3315513)
chr7 (21-124)||(3314955-3315058)
chr7 (82-130)||(767130-767178)
chr7 (76-124)||(24874578-24874626)
chr7 (72-124)||(34808985-34809037)
chr7 (75-119)||(36611556-36611600)
chr7 (76-124)||(41965777-41965825)
chr7 (82-124)||(2403447-2403489)
chr7 (82-124)||(17114145-17114187)
chr7 (74-124)||(35892301-35892351)
chr7 (82-124)||(42818559-42818601)
chr7 (82-124)||(46491694-46491736)
chr7 (75-124)||(30581265-30581314)
chr7 (87-124)||(33261424-33261461)
chr7 (76-124)||(767966-768014)
chr7 (82-126)||(27918616-27918660)
[»] chr4 (19 HSPs)
chr4 (31-124)||(56226462-56226555)
chr4 (51-126)||(56227030-56227105)
chr4 (75-124)||(14527575-14527624)
chr4 (75-123)||(20143280-20143328)
chr4 (77-124)||(24666129-24666176)
chr4 (74-124)||(6056997-6057047)
chr4 (97-127)||(52534987-52535017)
chr4 (75-124)||(21837389-21837438)
chr4 (87-124)||(34941502-34941539)
chr4 (62-122)||(38519172-38519233)
chr4 (76-129)||(51386451-51386504)
chr4 (75-124)||(51387124-51387173)
chr4 (76-124)||(13924793-13924841)
chr4 (76-120)||(18363653-18363697)
chr4 (78-126)||(21527027-21527075)
chr4 (76-124)||(26354232-26354280)
chr4 (72-124)||(34450815-34450867)
chr4 (76-120)||(36599231-36599275)
chr4 (82-126)||(47157385-47157429)
[»] chr1 (18 HSPs)
chr1 (26-103)||(11937720-11937799)
chr1 (41-124)||(27745556-27745639)
chr1 (77-133)||(24847774-24847830)
chr1 (36-120)||(32772104-32772188)
chr1 (77-124)||(24848427-24848474)
chr1 (77-124)||(26240872-26240919)
chr1 (21-67)||(11938383-11938429)
chr1 (82-124)||(16449555-16449597)
chr1 (82-124)||(16459129-16459171)
chr1 (82-128)||(31109235-31109281)
chr1 (76-121)||(5491336-5491381)
chr1 (76-124)||(13416335-13416383)
chr1 (55-118)||(16450444-16450507)
chr1 (55-118)||(16460020-16460083)
chr1 (77-124)||(26240114-26240161)
chr1 (76-126)||(12449312-12449362)
chr1 (82-124)||(31116690-31116732)
chr1 (51-120)||(2260857-2260926)
[»] chr6 (5 HSPs)
chr6 (21-67)||(8554467-8554513)
chr6 (30-89)||(8555064-8555125)
chr6 (54-124)||(13084857-13084927)
chr6 (76-124)||(2138477-2138525)
chr6 (76-124)||(10966380-10966428)
[»] chr2 (5 HSPs)
chr2 (82-124)||(18537499-18537541)
chr2 (75-124)||(20606920-20606969)
chr2 (82-124)||(127741-127783)
chr2 (76-124)||(10173936-10173984)
chr2 (75-123)||(34595933-34595981)
[»] scaffold0627 (1 HSPs)
scaffold0627 (76-124)||(6464-6512)


Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 125 - 467
Target Start/End: Original strand, 47935293 - 47935635
Alignment:
Q  125 gtaaaacaagtgaaattgcaagttccagaaatattagtgcatgtagttttattgttcgtcaaaaacattctaatatccaatatataaaacataaatgtga 224  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  47935293 gtaaaacaagtgaaattgcaagttccagaaatattagtgcatttagttttattgttcgtcaaaaacattctagcatccaatatataaaacataaatgtga 47935392  T
Q  225 gtatttaatatgtgggttcaaggacaataattatttcttccctcccctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgt 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47935393 gtatttaatatgtgggttcaaggacaataattatttcttccctcccctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgt 47935492  T
Q  325 aacagtatggttctgcagcataagtagttacatatgctggatatttgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaaccc 424  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47935493 aacaatatggttctgcagcataagtagttacatatgctggatatttgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaaccc 47935592  T
Q  425 aaatcgaccacttgcttcttctccactacccatctgtgctcct 467  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  47935593 aaatcgaccacttgcttcttctccactacccatctgtgttcct 47935635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 270 - 467
Target Start/End: Original strand, 47928004 - 47928201
Alignment:
Q  270 cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttctgcagcataagtagttacatatgctggatatt 369  Q
    |||||||| || ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||  ||| ||||| ||| |||||| |    
T  47928004 cctccaaagtagaatacaggatcttttccatatggagcgtcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatact 47928103  T
Q  370 tgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgctcct 467  Q
    | ||||||| ||||||||| |||||||| ||| | |  ||||||||||||  ||||||||||||||||||| | ||||||||||||||||||| ||||    
T  47928104 taagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcatctccactacccatctgtgttcct 47928201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 270 - 467
Target Start/End: Original strand, 47946580 - 47946777
Alignment:
Q  270 cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttctgcagcataagtagttacatatgctggatatt 369  Q
    ||||||||| | || |||||||||| ||||||| || | || |||||||||||||||||||| |||||||| ||||| ||| ||||| ||  |||||| |    
T  47946580 cctccaaaaaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatact 47946679  T
Q  370 tgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgctcct 467  Q
    |||||| || |||||||||||||||||| |||||  | ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||    
T  47946680 tgagagtttctgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcct 47946777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 47918242 - 47918310
Alignment:
Q  270 cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttct 338  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||| |||||||||    
T  47918242 cctccaaaatagaatacaggatcttttccatatggagcatcattgaaggcactgtaacaatatggttct 47918310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 54308526 - 54308454
Alignment:
Q  51 ttatttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaatccac 123  Q
    |||||||||| || |||||||  ||||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  54308526 ttatttaatctaacggtcaaaataagtggttcaccggtgagggacttaattgaaccctcaccctagaatccac 54308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 18745345 - 18745418
Alignment:
Q  51 ttatttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||| |||||||||||  |||||| |||||||||||||| | |||||||||||| |||||||| ||||    
T  18745345 ttatttaatctaatggtcaaattcagtggtgcaccggtgagggacttgattgaaccctcaccctagaattcacc 18745418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 18744693 - 18744625
Alignment:
Q  51 ttatttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaat 119  Q
    |||||||||| |||||||||||  |||||| |||||||||||||| | ||| |||||||||||||||||    
T  18744693 ttatttaatctaatggtcaaatttagtggtgcaccggtgagggacttgattaaaccctcatcctagaat 18744625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 20807984 - 20807937
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||    
T  20807984 tggtacaccggtgagggacttaattgaaccctcaccctagaatccacc 20807937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 20808608 - 20808658
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccaccgta 127  Q
    ||||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  20808608 tggtacaccggtgagggacttacttgaaccctcaccctagaatccaccgta 20808658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 4706957 - 4707004
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||||    
T  4706957 tggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 4707004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 15287616 - 15287567
Alignment:
Q  75 agtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||| |||||||||||||| |||||| ||||||| |||||||||||||    
T  15287616 agtggtccaccggtgagggacttaattggaccctcaccctagaatccacc 15287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 47677568 - 47677523
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatcca 122  Q
    |||| |||| ||||||||| ||||||||||||||||||||||||||    
T  47677568 tggttcaccagtgagggacttaattgaaccctcatcctagaatcca 47677523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 49350271 - 49350320
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccaccgt 126  Q
    |||| |||||| ||||||| |||||||||||||| |||||||||||||||    
T  49350271 tggttcaccggcgagggacttaattgaaccctcaccctagaatccaccgt 49350320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 55323 - 55375
Alignment:
Q  72 taaagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||  | ||||||||||| ||||||||||||||||||||||| ||||    
T  55323 taaagtggtctatcggtgagggacttaattgaaccctcatcctagaattcacc 55375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 36540008 - 36540088
Alignment:
Q  53 atttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaatccaccgtaaaacaa 133  Q
    |||||||| |||||| ||| | |||||||| |||||||||||   ||||||||||||| |||||| ||||||  |||||||    
T  36540008 atttaatctaatggtaaaaaagagtggtacgccggtgagggattcaattgaaccctcaccctagagtccaccccaaaacaa 36540088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 49349718 - 49349674
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccaccgt 126  Q
    |||||||||||||| ||||||| |||||| |||||||||||||||    
T  49349718 caccggtgagggacttaattgatccctcaccctagaatccaccgt 49349674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 54751843 - 54751796
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||| |||| ||| || |||||||||||||||||||||||||    
T  54751843 tggtacaccgatgagagacttatttgaaccctcatcctagaatccacc 54751796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 3584055 - 3584005
Alignment:
Q  74 aagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||||||||||  ||||||  |||||| |||||||||||||    
T  3584055 aagtggtacaccggtgagggatttaattgctccctcaccctagaatccacc 3584005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 9830619 - 9830573
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccac 123  Q
    |||| |||||||||||||| |||||||||||||| || |||||||||    
T  9830619 tggtccaccggtgagggacttaattgaaccctcacccgagaatccac 9830573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 47571238 - 47571196
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||| ||||||| |||||| |||||||||||||    
T  47571238 caccggtgagggacttaattgatccctcaccctagaatccacc 47571196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 53344059 - 53344017
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||| | ||||| ||||||||||||||||||||    
T  53344059 caccggtgagggacttgattgatccctcatcctagaatccacc 53344017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 43454161 - 43454210
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccaccg 125  Q
    ||||| ||| |||||||||| |||||| ||||||| ||||||||||||||    
T  43454161 gtggtccacaggtgagggacctaattggaccctcaccctagaatccaccg 43454210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 47571945 - 47571989
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccaccgt 126  Q
    |||||||||||||| ||||||| |||||| |||||||| ||||||    
T  47571945 caccggtgagggacttaattgatccctcaccctagaattcaccgt 47571989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 33322147 - 33322251
Alignment:
Q  20 atgtggtcacaaataatgagttcatatggtcttatttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaat 119  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||||||||    
T  33322147 atgtggtcacaaataatgagttcatatgttcttatttaatccaatggtcaaataaagttgtacacatgtgagggatataattgaaccctcatcctagaat 33322246  T
Q  120 ccacc 124  Q
    |||||    
T  33322247 ccacc 33322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 33321591 - 33321498
Alignment:
Q  30 aaataatgagttcatatggtcttatttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaatccac 123  Q
    |||||||||| || ||| |||||||||||||||||||||||||||| ||||||| | ||||||||| |||||||||| ||| | ||||||||||    
T  33321591 aaataatgagatcttatagtcttatttaatccaatggtcaaataaattggtacatcagtgagggacttaattgaaccatcaccttagaatccac 33321498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 16911047 - 16911096
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccaccgt 126  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||||||||    
T  16911047 tggtacaccggtgagggacttaattgagccctcaccctagaatccaccgt 16911096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 4402284 - 4402335
Alignment:
Q  73 aaagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||| |||||||||||||| |||| ||||||||| |||||||||||||    
T  4402284 aaagtggttcaccggtgagggacttaatagaaccctcaccctagaatccacc 4402335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 202619 - 202577
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  202619 caccggtgagggacttaattgaaccctcatcctagaattcacc 202577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 317456 - 317414
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  317456 caccggtgagggacttaattgaaccctcatcctagaattcacc 317414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 26847720 - 26847769
Alignment:
Q  75 agtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||| ||||||||||| || ||||||| ||||||||||||||||||||    
T  26847720 agtggttcaccggtgaggaacttaattgatccctcatcctagaatccacc 26847769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 19220965 - 19220913
Alignment:
Q  72 taaagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||  |||||||| |||| ||||||||||||||||||||||| ||||    
T  19220965 taaagtggtctaccggtgacggacttaattgaaccctcatcctagaattcacc 19220913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 26847145 - 26847097
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||||||||||||| |||||| ||||||| |||||||||||||    
T  26847145 gtggttcaccggtgagggacttaattggaccctcaccctagaatccacc 26847097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 22632969 - 22633016
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||| |||||||||||||| ||||||| |||||| |||||||||||||    
T  22632969 tggtccaccggtgagggacttaattgatccctcaccctagaatccacc 22633016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 32339995 - 32339948
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||||| |||| |||||| ||||||||| ||||||||||||||||||    
T  32339995 tggtacatcggtcagggacttaattgaactctcatcctagaatccacc 32339948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 35347716 - 35347665
Alignment:
Q  73 aaagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||| ||||||| |||||| |||| |||||||||||||| ||||||||    
T  35347716 aaagtggttcaccggtaagggacttaatagaaccctcatcctaaaatccacc 35347665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 22632369 - 22632323
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccac 123  Q
    |||| |||||||||||||| ||||||| |||||| ||||||||||||    
T  22632369 tggtccaccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 40599929 - 40599887
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||| |  |||||||||||||||||||||||||    
T  40599929 caccggtgagggacttgtttgaaccctcatcctagaatccacc 40599887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 42094051 - 42094009
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||| ||||||| |||||| |||||||||||||    
T  42094051 caccggtgagggacttaattgatccctcaccctagaatccacc 42094009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 203460 - 203524
Alignment:
Q  55 ttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaat 119  Q
    |||||| |||||| ||||  |||||||||||| ||| |||  |||||||||||||| ||||||||    
T  203460 ttaatctaatggttaaatttagtggtacaccgatgaaggatttaattgaaccctcaccctagaat 203524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 318297 - 318361
Alignment:
Q  55 ttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaat 119  Q
    |||||| |||||| ||||  |||||||||||| ||| |||  |||||||||||||| ||||||||    
T  318297 ttaatctaatggttaaatttagtggtacaccgatgaaggatttaattgaaccctcaccctagaat 318361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 5434080 - 5434032
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| ||||||||| |||| |||||| ||||||| |||||||||||||    
T  5434080 gtggtccaccggtgaaggacttaattggaccctcaccctagaatccacc 5434032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 36403025 - 36403073
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||||||||||||| |||||| |||||||  ||||||||||||    
T  36403025 gtggtccaccggtgagggacctaattggaccctcactctagaatccacc 36403073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 29595012 - 29594906
Alignment:
Q  18 caatgtggtcacaaataatgagttcatatggtcttatttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||| | || |||||||||||||| ||||||    
T  29595012 caatgtggtcacaaataatgagttcatatggtcttatttaatccaatgaccaaataaagtggtacatcggtgaagaacttaattgaaccctcaccctaga 29594913  T
Q  118 atccacc 124  Q
    |||||||    
T  29594912 atccacc 29594906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 29595548 - 29595642
Alignment:
Q  30 aaataatgagttcatatggtcttatttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||| || ||| ||||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||||  ||||||||||||    
T  29595548 aaataatgagatcttatagtcttatttaatctaatggtcaaataaactggtacactggtgagggacttaattgaaccctcacgctagaatccacc 29595642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 27345897 - 27345967
Alignment:
Q  54 tttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||| |||||  |||||||| | ||||||||||| |||||||||||||| |||||||||||||    
T  27345897 tttaatccaatgatcaaaataagtggtatatcggtgagggacttaattgaaccctcaccctagaatccacc 27345967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 35524170 - 35524122
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  35524170 gtggtccaccggtgagggacttaattgaactctcatcctagaatccacc 35524122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 7806522 - 7806457
Alignment:
Q  26 tcacaaataatgagttcatatggtcttatttaatccaatggtcaaataaa--gtggtacaccggtg 89  Q
    |||||||||| ||| || ||| |||||||||||||||||||||||||| |  ||||||||||||||    
T  7806522 tcacaaataaggagatcctatagtcttatttaatccaatggtcaaatatagtgtggtacaccggtg 7806457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 7807065 - 7807111
Alignment:
Q  21 tgtggtcacaaataatgagttcatatggtcttatttaatccaatggt 67  Q
    ||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  7807065 tgtggtcacgaataaggagatcatatggtcttatttaatccaatggt 7807111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 23253486 - 23253534
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||||||||||||| |||||| ||||||| |||||||||||||    
T  23253486 gtggttcaccggtgagggacttaattggaccctcaccctagaatccacc 23253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 24565620 - 24565572
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccaccg 125  Q
    |||| |||||||||||||  |||||||||||||| ||||||||||||||    
T  24565620 tggtccaccggtgagggatttaattgaaccctcaccctagaatccaccg 24565572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 24606656 - 24606608
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccaccg 125  Q
    |||| |||||||||||||  |||||||||||||| ||||||||||||||    
T  24606656 tggtccaccggtgagggatttaattgaaccctcaccctagaatccaccg 24606608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 39937906 - 39937954
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||||||||||||| ||| |||||||||| |||||||||||||    
T  39937906 gtggtccaccggtgagggacttaactgaaccctcaccctagaatccacc 39937954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 39466936 - 39466885
Alignment:
Q  73 aaagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||| |||||||||||||| |||||| ||||||| |||||||| ||||    
T  39466936 aaagtggtccaccggtgagggacttaattggaccctcaccctagaattcacc 39466885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 2029053 - 2029095
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||| ||||||| |||||| |||||||||||||    
T  2029053 caccggtgagggacttaattgagccctcaccctagaatccacc 2029095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 16195123 - 16195177
Alignment:
Q  70 aataaagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||||||||| |||| |||| ||||||| |||||| |||||||||||||    
T  16195123 aataatgtggtacaccagtgatggacttaattgatccctcaccctagaatccacc 16195177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 33086771 - 33086729
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||    
T  33086771 caccggtgaaggacttaattgatccctcatcctagaatccacc 33086729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 40372166 - 40372208
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||||||||| || |||||||||||||| |||||||||||||    
T  40372166 caccggtgaggaacttaattgaaccctcaccctagaatccacc 40372208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 13541431 - 13541366
Alignment:
Q  55 ttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaatc 120  Q
    |||||| ||||||||| |||| |||||||||| | || ||| | ||||| ||||||||||||||||    
T  13541431 ttaatctaatggtcaattaaaatggtacaccgataagagacttgattgatccctcatcctagaatc 13541366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 18925183 - 18925235
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccaccgtaaa 129  Q
    |||||||  |||||||||  ||||||||| |||||||||||||||||| ||||    
T  18925183 tggtacataggtgagggatttaattgaactctcatcctagaatccaccataaa 18925235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 3315405 - 3315513
Alignment:
Q  18 caatgtggtcacaaataatgagttcatatggtcttatttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctaga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| || ||||||||||||| ||||||| |||||| | ||||    
T  3315405 caatgtggtcacaaataatgagttcatatggtcttatttaatccgatggttaaattaagtgttataccggtgagggacttaattgagccctcaccttaga 3315504  T
Q  118 atccaccgt 126  Q
    |||||||||    
T  3315505 atccaccgt 3315513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 3315058 - 3314955
Alignment:
Q  21 tgtggtcacaaataatgagttcatatggtcttatttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaatc 120  Q
    |||||| | |||||||||| |  |||||| | ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||||    
T  3315058 tgtggttataaataatgagatagtatggtttcatttaatccaatggttaaataaagtggtacaccggtgagggacttaattgaaccctcaccgtagaatc 3314959  T
Q  121 cacc 124  Q
    ||||    
T  3314958 cacc 3314955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 767178 - 767130
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccaccgtaaaa 130  Q
    |||||||||||||| |||||| ||||||| |||||||||||||||||||    
T  767178 caccggtgagggacttaattggaccctcaccctagaatccaccgtaaaa 767130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 24874578 - 24874626
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| ||||| |||||||| |||||||||||||| |||||||||||||    
T  24874578 gtggtccaccgatgagggacctaattgaaccctcaccctagaatccacc 24874626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 34808985 - 34809037
Alignment:
Q  72 taaagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||||||||||||| ||| |||| ||||||||||||||  ||||||||||||    
T  34808985 taaagtggtacaccgatgaaggacttaattgaaccctcactctagaatccacc 34809037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 36611600 - 36611556
Alignment:
Q  75 agtggtacaccggtgagggacataattgaaccctcatcctagaat 119  Q
    |||||| |||||||||||||| |||||||||||||| ||||||||    
T  36611600 agtggttcaccggtgagggacttaattgaaccctcaccctagaat 36611556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 41965777 - 41965825
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||||||||||||| |||||| ||||||| |||||||||||||    
T  41965777 gtggtccaccggtgagggacttaattggaccctcaccctagaatccacc 41965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 2403447 - 2403489
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||| || |||||||||||||||||||| ||||    
T  2403447 caccggtgagggacttagttgaaccctcatcctagaattcacc 2403489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 17114187 - 17114145
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||||||| |||||||||||||| |||||||||||||    
T  17114187 caccgatgagggacttaattgaaccctcaccctagaatccacc 17114145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 35892301 - 35892351
Alignment:
Q  74 aagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||||||||||  ||||||  |||||| |||||||||||||    
T  35892301 aagtggtacaccggtgagggatttaattgctccctcaccctagaatccacc 35892351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 42818559 - 42818601
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||| |||||||||||||| |||||||| ||||    
T  42818559 caccggtgagggacttaattgaaccctcaccctagaattcacc 42818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 46491694 - 46491736
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||| || ||||||||||| |||||||||||||    
T  46491694 caccggtgagggacttagttgaaccctcaccctagaatccacc 46491736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 30581265 - 30581314
Alignment:
Q  75 agtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||| ||| |||||||||| |||||||||||||| |||||||| ||||    
T  30581265 agtggttcactggtgagggacttaattgaaccctcaccctagaattcacc 30581314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 33261424 - 33261461
Alignment:
Q  87 gtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  33261424 gtgagggacttaattggaccctcatcctagaatccacc 33261461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 767966 - 768014
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||||||||||||| |||||| ||||||| |||| ||||||||    
T  767966 gtggtccaccggtgagggacttaattggaccctcaccctaaaatccacc 768014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 27918616 - 27918660
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccaccgt 126  Q
    |||||||||||||| |||||| |||||||||||| ||| ||||||    
T  27918616 caccggtgagggacctaattggaccctcatcctaaaattcaccgt 27918660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 56226555 - 56226462
Alignment:
Q  31 aataatgagttcatatggtcttatttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||| || || |||||||||||| |||| |||||| ||||||||||||||| ||||||| ||| ||||||| |||||||| |||||||||||    
T  56226555 aataattagatcctatggtcttattaaatctaatggttaaataaagtggtacatcggtgagagacttaattgatccctcatcttagaatccacc 56226462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 56227030 - 56227105
Alignment:
Q  51 ttatttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaatccaccgt 126  Q
    ||||| ||||||| ||| |||||||||||||||||||||| |||| | ||||| ||||||  ||||||||||||||    
T  56227030 ttattaaatccaacggttaaataaagtggtacaccggtgaaggacttcattgagccctcactctagaatccaccgt 56227105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 14527575 - 14527624
Alignment:
Q  75 agtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||| |||||||||||||| ||||||| |||||| |||||||||||||    
T  14527575 agtggttcaccggtgagggacttaattgatccctcaccctagaatccacc 14527624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 20143328 - 20143280
Alignment:
Q  75 agtggtacaccggtgagggacataattgaaccctcatcctagaatccac 123  Q
    ||||||||||||||||||||| || |||| |||||| ||||||||||||    
T  20143328 agtggtacaccggtgagggacttagttgagccctcaccctagaatccac 20143280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 24666176 - 24666129
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||| |||||||||||||| ||||||| |||||| |||||||||||||    
T  24666176 tggttcaccggtgagggacttaattgatccctcaccctagaatccacc 24666129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 6056997 - 6057047
Alignment:
Q  74 aagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||||| |||||||||||||| || | ||||||||| |||||||||||||    
T  6056997 aagtggtccaccggtgagggacttagtagaaccctcaccctagaatccacc 6057047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 127
Target Start/End: Complemental strand, 52535017 - 52534987
Alignment:
Q  97 taattgaaccctcatcctagaatccaccgta 127  Q
    |||||||||||||||||||||||||||||||    
T  52535017 taattgaaccctcatcctagaatccaccgta 52534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 21837438 - 21837389
Alignment:
Q  75 agtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||||| ||||||||||||| || ||| ||||||| |||||||||||||    
T  21837438 agtggtaaaccggtgagggacttagttggaccctcaccctagaatccacc 21837389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 34941539 - 34941502
Alignment:
Q  87 gtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  34941539 gtgagggacttaattgaaccctcaccctagaatccacc 34941502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 38519172 - 38519233
Alignment:
Q  62 aatggtcaaata-aagtggtacaccggtgagggacataattgaaccctcatcctagaatcca 122  Q
    |||||| ||||| |||||||||||||||||||||| ||||||  || ||| |||||||||||    
T  38519172 aatggtaaaatataagtggtacaccggtgagggacttaattgctccttcaccctagaatcca 38519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 51386504 - 51386451
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccaccgtaaa 129  Q
    ||||| ||| |||||||||| |||||||||||||| |||| |||||||| ||||    
T  51386504 gtggttcactggtgagggacttaattgaaccctcaccctaaaatccaccataaa 51386451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 51387124 - 51387173
Alignment:
Q  75 agtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||| |||||||||||||| ||||||| |||||| |||| ||||||||    
T  51387124 agtggttcaccggtgagggacgtaattgatccctcaccctataatccacc 51387173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 13924841 - 13924793
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||||||||||||  ||||||| |||||| |||||||||||||    
T  13924841 gtggtccaccggtgagggatttaattgagccctcaccctagaatccacc 13924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 18363653 - 18363697
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatc 120  Q
    ||||| ||||||||||| || |||||||||||||| |||||||||    
T  18363653 gtggtccaccggtgaggaacttaattgaaccctcaccctagaatc 18363697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 21527027 - 21527075
Alignment:
Q  78 ggtacaccggtgagggacataattgaaccctcatcctagaatccaccgt 126  Q
    |||||| ||||||||||| |||| || |||||| |||||||||||||||    
T  21527027 ggtacaacggtgagggacttaatagagccctcaccctagaatccaccgt 21527075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 26354232 - 26354280
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||| ||||||||| |||||||||||||| ||||||| |||||    
T  26354232 gtggtccacctgtgagggacttaattgaaccctcaccctagaacccacc 26354280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 34450867 - 34450815
Alignment:
Q  72 taaagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||||| | |||||||||||||| ||||||| |||||| |||||||| ||||    
T  34450867 taaagtgctccaccggtgagggacttaattgatccctcaccctagaattcacc 34450815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 36599275 - 36599231
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatc 120  Q
    ||||| ||||||||||| || |||||||||||||| |||||||||    
T  36599275 gtggtccaccggtgaggaacttaattgaaccctcaccctagaatc 36599231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 47157385 - 47157429
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccaccgt 126  Q
    |||||||||||||  |||||||||||||| |||||||| ||||||    
T  47157385 caccggtgagggatttaattgaaccctcaccctagaattcaccgt 47157429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 11937799 - 11937720
Alignment:
Q  26 tcacaaataatgagttcatatggtcttatttaatccaatggtcaaataaa--gtggtacaccggtgagggacataattga 103  Q
    |||||||||| ||| |||||| |||||||||||||||||||||||||| |  |||||||||||||||||||  |||||||    
T  11937799 tcacaaataaggagatcatatagtcttatttaatccaatggtcaaatatagtgtggtacaccggtgagggatttaattga 11937720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 27745639 - 27745556
Alignment:
Q  41 tcatatggtcttatttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||| | ||||||||||| |||| |||| |||||||||| | ||||||||||| |||||||||||||| | |||||||||||    
T  27745639 tcatatagacttatttaatctaatgatcaattaaagtggtatatcggtgagggacttaattgaaccctcaccttagaatccacc 27745556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 24847830 - 24847774
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccaccgtaaaacaa 133  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||||| |||||||    
T  24847830 tggtacaccggtgagggacttaatagaaccctcaccctagaatccaccgcaaaacaa 24847774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 32772188 - 32772104
Alignment:
Q  36 tgagttcatatggtcttatttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaatc 120  Q
    |||| |||||| | ||||||||||| ||||||||| |||||||||||| ||||||||| | ||||||| |||||| | |||||||    
T  32772188 tgagatcatatagacttatttaatctaatggtcaattaaagtggtacatcggtgaggggcttaattgagccctcaccttagaatc 32772104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 24848427 - 24848474
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||||    
T  24848427 tggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 24848474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 26240872 - 26240919
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||| |||||||||||||| |||||||||||||| |||||||||||||    
T  26240872 tggtccaccggtgagggacttaattgaaccctcaccctagaatccacc 26240919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 11938383 - 11938429
Alignment:
Q  21 tgtggtcacaaataatgagttcatatggtcttatttaatccaatggt 67  Q
    ||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  11938383 tgtggtcacgaataaggagatcatatggtcttatttaatccaatggt 11938429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 16449597 - 16449555
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||| |||||||||||||| |||||||||||||    
T  16449597 caccggtgagggacttaattgaaccctcaccctagaatccacc 16449555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 16459171 - 16459129
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||| |||||||||||||| |||||||||||||    
T  16459171 caccggtgagggacttaattgaaccctcaccctagaatccacc 16459129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 31109281 - 31109235
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccaccgtaa 128  Q
    |||||||||||||| |||||| ||||||| |||||||||||||||||    
T  31109281 caccggtgagggacctaattggaccctcaccctagaatccaccgtaa 31109235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 5491336 - 5491381
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatcc 121  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||||    
T  5491336 gtggtccaccggtgagggacctaattggaccctcatcctagaatcc 5491381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 13416335 - 13416383
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||||| ||||||| |||||| |||||||||||||||||||||    
T  13416335 gtggtccaccggcgagggacctaattggaccctcatcctagaatccacc 13416383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 16450444 - 16450507
Alignment:
Q  55 ttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaa 118  Q
    |||||| |||||| ||||  ||||||||||| ||||||||  |||||||||||||| |||||||    
T  16450444 ttaatctaatggttaaatttagtggtacaccagtgagggatttaattgaaccctcaccctagaa 16450507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 16460020 - 16460083
Alignment:
Q  55 ttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaa 118  Q
    |||||| |||||| ||||  ||||||||||| ||||||||  |||||||||||||| |||||||    
T  16460020 ttaatctaatggttaaatttagtggtacaccagtgagggatttaattgaaccctcaccctagaa 16460083  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 26240161 - 26240114
Alignment:
Q  77 tggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||| |||||||||||||| ||||||| |||||| |||||||||||||    
T  26240161 tggttcaccggtgagggacttaattgatccctcaccctagaatccacc 26240114  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 12449312 - 12449362
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccaccgt 126  Q
    ||||| |||||||||||||| ||||||| |||||| |||| ||||||||||    
T  12449312 gtggtccaccggtgagggacttaattgatccctcaccctaaaatccaccgt 12449362  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 31116690 - 31116732
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||| |||||| ||||||| |||||||||||||    
T  31116690 caccggtgagggacctaattggaccctcaccctagaatccacc 31116732  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 2260926 - 2260857
Alignment:
Q  51 ttatttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaatc 120  Q
    ||||||||| ||||| || |  ||| ||||| ||||||||||||| | |||||||||||| |||||||||    
T  2260926 ttatttaattcaatgatcgatcaaaatggtataccggtgagggacttgattgaaccctcaccctagaatc 2260857  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 8554513 - 8554467
Alignment:
Q  21 tgtggtcacaaataatgagttcatatggtcttatttaatccaatggt 67  Q
    ||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  8554513 tgtggtcacgaataaggagatcatatggtcttatttaatccaatggt 8554467  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 8555064 - 8555125
Alignment:
Q  30 aaataatgagttcatatggtcttatttaatccaatggtcaaataaa--gtggtacaccggtg 89  Q
    |||||| ||| || ||| |||||||||||||||||||||||||| |  ||||||||||||||    
T  8555064 aaataaggagatcctatagtcttatttaatccaatggtcaaatatagtgtggtacaccggtg 8555125  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 13084857 - 13084927
Alignment:
Q  54 tttaatccaatggtcaaataaagtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||||| || |||||||   ||||||||||||||||| ||| || ||||||||||| |||||||| ||||    
T  13084857 tttaatctaaaggtcaaagttagtggtacaccggtgagagacttagttgaaccctcaccctagaattcacc 13084927  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 2138525 - 2138477
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||||||||||||| |||||| ||||||| |||||||| ||||    
T  2138525 gtggtccaccggtgagggacctaattggaccctcaccctagaattcacc 2138477  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 10966380 - 10966428
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||||||||||||| |||||| ||| ||| |||||||||||||    
T  10966380 gtggtccaccggtgagggacctaattggaccttcaccctagaatccacc 10966428  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 18537499 - 18537541
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||||||||||| |||||||||||||||| |||||||||||    
T  18537499 caccggtgagggacttaattgaaccctcatcatagaatccacc 18537541  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 20606920 - 20606969
Alignment:
Q  75 agtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    |||||| |||||||||||||| |||||||||||||| |||||||| ||||    
T  20606920 agtggttcaccggtgagggacttaattgaaccctcaccctagaattcacc 20606969  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 127741 - 127783
Alignment:
Q  82 caccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||||||| |||| |||||||||||||| |||||||||||||    
T  127741 caccggtgaaggacttaattgaaccctcaccctagaatccacc 127783  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 10173984 - 10173936
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| |||||||||||||| |||  ||||||||| |||||||||||||    
T  10173984 gtggttcaccggtgagggacttaacagaaccctcaccctagaatccacc 10173936  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 34595933 - 34595981
Alignment:
Q  75 agtggtacaccggtgagggacataattgaaccctcatcctagaatccac 123  Q
    ||||||||||||||||||||  || |||||||||||  |||||||||||    
T  34595933 agtggtacaccggtgagggatttagttgaaccctcactctagaatccac 34595981  T

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Target: scaffold0627 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 6512 - 6464
Alignment:
Q  76 gtggtacaccggtgagggacataattgaaccctcatcctagaatccacc 124  Q
    ||||| || ||||||||||| |||||||||||||| ||||||| |||||    
T  6512 gtggtccatcggtgagggacttaattgaaccctcaccctagaacccacc 6464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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