View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13949_low_6 (Length: 462)
Name: NF13949_low_6
Description: NF13949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13949_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 38 - 450
Target Start/End: Complemental strand, 40092787 - 40092377
Alignment:
| Q |
38 |
aaaatgagtcgttcactttagagaaattacaaatgatattaatttgatttatggtttaagcagggagttggtagaggcaggaaaagacacagaaagtgcc |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40092787 |
aaaatgagtcgttcactttagagaaattacaaatgatattaatttgatttatggtttaagcagggagttggtagaggcaggaaaagacacagaaagtgcc |
40092688 |
T |
|
| Q |
138 |
tactgggaattggttgtgaaggacatacatgatacttgcaaactcttggagccaatttacaacgaaagtgatggtatagatgggtatgtatcaattgcag |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40092687 |
tactgggaattggttgtgaaggacatacatgatacttgcaaactcttggagccaatttacaacgaaagtgatggtatagatgggtatgtatcaattgcag |
40092588 |
T |
|
| Q |
238 |
tctcccccaagcttgcaaatgacaccaaagggacaattaatgcagcaaaatgtcttcataaaatggttggatgtccaaatgtttatattaaaattcctgc |
337 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40092587 |
tctcccccgagcttgcaaatgacaccaaagggacaattgaggcagcaaaatgtcttcataaaatggttggatgtccaaatgtttatattaaaattcctgc |
40092488 |
T |
|
| Q |
338 |
aactcatgaatccattccttcaataaaggaagtcatttctctagggatcagtgtaaatgtcactgtaagtttgttatttatcaacaacattcttgtataa |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |
|
|
| T |
40092487 |
aactcatgaatccattccttcaataaaggaagtcatttctctagggatcagtgtaaatgtcactgtaagtttgttatttatcaaca--ttccttatataa |
40092390 |
T |
|
| Q |
438 |
acaaaattgatca |
450 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40092389 |
acaaaattgatca |
40092377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University