View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13949_low_9 (Length: 417)

Name: NF13949_low_9
Description: NF13949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13949_low_9
NF13949_low_9
[»] chr8 (12 HSPs)
chr8 (215-403)||(38451886-38452074)
chr8 (11-194)||(38452109-38452292)
chr8 (320-403)||(38634701-38634784)
chr8 (11-90)||(38634384-38634460)
chr8 (122-194)||(38634489-38634563)
chr8 (233-297)||(38634639-38634703)
chr8 (219-259)||(39851620-39851660)
chr8 (128-194)||(39851502-39851567)
chr8 (11-63)||(39851407-39851459)
chr8 (219-273)||(34533148-34533202)
chr8 (327-369)||(39851739-39851781)
chr8 (278-322)||(39851664-39851708)
[»] chr4 (3 HSPs)
chr4 (222-309)||(44476117-44476204)
chr4 (137-190)||(44476023-44476076)
chr4 (324-369)||(44476248-44476293)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 215 - 403
Target Start/End: Complemental strand, 38452074 - 38451886
Alignment:
Q  215 cttatagttagttggttgtgtgattgttgatttttaatgcctgctgccatattcatcattgtttggttttcttgttgcaagttttcctttgtgcactaga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38452074 cttatagttagttggttgtgtgattgttgatttttaatgcctgctgccatattcatcattgtttggttttcttgttgcaagttttcctttgtgcactaga 38451975  T
Q  315 tccctgttcttgtagcttcattacatagttaaatcaccgaacatcttgatgagcaatttttgtcaacattaactttaaaaagtggaaat 403  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38451974 tccttgttcttgtagcttcattacatagttaaatcaccgaacatcttgatgagcaatttttgtcaacattaacattaaaaagtggaaat 38451886  T

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Target: chr8; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 38452292 - 38452109
Alignment:
Q  11 ttattctcaatacatcttaacttgttacactttatttcatttatcttattattactcactagcaaaatcatctcagcatggccactgttggtccccttct 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38452292 ttattcttaatacatcttaacttgttacactttatttcatttatcttattattattcactagcaaaatcatctcagcatggccactgttggtccccttct 38452193  T
Q  111 agctccattcctgaatgttagaggtgacaaacatcttattcacattttctgtttagtttagacttcaaactattcatcatgatt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38452192 agctccattcctgaatgttagaggtgacaaacatcttattcacattttctgtttagtttagacttcaaactattcatcatgatt 38452109  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 320 - 403
Target Start/End: Original strand, 38634701 - 38634784
Alignment:
Q  320 gttcttgtagcttcattacatagttaaatcaccgaacatcttgatgagcaatttttgtcaacattaactttaaaaagtggaaat 403  Q
    |||||||| |||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||||| |||||||| ||||||    
T  38634701 gttcttgtcgcttcattacatagttaaatcatcaaacaccttgatgagcattttttgtcaacattaacgttaaaaagaggaaat 38634784  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 38634384 - 38634460
Alignment:
Q  11 ttattctcaatacatcttaacttgttacactttatttcatttatcttattattactcactagcaaaatcatctcagcatg 90  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||   |||| ||||||| ||||||||||||    
T  38634384 ttattttcaaaacatcttaacttgttacactttatttcatttatcttattat---tcacaagcaaaaacatctcagcatg 38634460  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 38634489 - 38634563
Alignment:
Q  122 tgaatgttagaggtgacaaacatcttattcaca--ttttctgtttagtttagacttcaaactattcatcatgatt 194  Q
    |||||||||||||||||||||||||||||||||  |||||  ||||||||||||||||||  |||||||||||||    
T  38634489 tgaatgttagaggtgacaaacatcttattcacattttttccatttagtttagacttcaaaacattcatcatgatt 38634563  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 38634639 - 38634703
Alignment:
Q  233 tgtgattgttgatttttaatgcctgctgccatattcatcattgtttggttttcttgttgcaagtt 297  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||| ||||    
T  38634639 tgtgattgttgatttttaatgcttgctgccatattcatctttgtttggtattctcgttgccagtt 38634703  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 39851620 - 39851660
Alignment:
Q  219 tagttagttggttgtgtgattgttgatttttaatgcctgct 259  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  39851620 tagttagttggttgtgtgattgttgatttttaatgcttgct 39851660  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 39851502 - 39851567
Alignment:
Q  128 ttagaggtgacaaacatcttattcacattttctgtttagtttagacttcaaactattcatcatgatt 194  Q
    ||||| |||||| ||||||||||||||||||| |||| ||| ||||||||||  |||||||||||||    
T  39851502 ttagaagtgacagacatcttattcacattttc-gttttgttgagacttcaaaacattcatcatgatt 39851567  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 39851407 - 39851459
Alignment:
Q  11 ttattctcaatacatcttaacttgttacactttatttcatttatcttattatt 63  Q
    |||||||||  ||||||||||||||||||  |||||| |||||||||||||||    
T  39851407 ttattctcataacatcttaacttgttacatattattttatttatcttattatt 39851459  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 34533202 - 34533148
Alignment:
Q  219 tagttagttggttgtgtgattgttgatttttaatgcctgctgccatattcatcat 273  Q
    ||||||| |||||||||||||||||||| ||||||  | |||||||| |||||||    
T  34533202 tagttagctggttgtgtgattgttgattgttaatgtttactgccatactcatcat 34533148  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 39851739 - 39851781
Alignment:
Q  327 tagcttcattacatagttaaatcaccgaacatcttgatgagca 369  Q
    ||||||||||||||||||||||||  ||||| |||||||||||    
T  39851739 tagcttcattacatagttaaatcattgaacaccttgatgagca 39851781  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 39851664 - 39851708
Alignment:
Q  278 tggttttcttgttgcaagttttcctttgtgcactagatccctgtt 322  Q
    |||| |||||||||||||||||||||||||||  |||||| ||||    
T  39851664 tggtattcttgttgcaagttttcctttgtgcatgagatccttgtt 39851708  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 309
Target Start/End: Original strand, 44476117 - 44476204
Alignment:
Q  222 ttagttggttgtgtgattgttgatttttaatgcctgctgccatattcatcattgtttggttttcttgttgcaagttttcctttgtgca 309  Q
    |||||||||||| | |||||||||||||||||| |||| ||| |||||||||||  | || |||||||||||||||||||||||||||    
T  44476117 ttagttggttgtatcattgttgatttttaatgcttgctaccaaattcatcattgagttgtattcttgttgcaagttttcctttgtgca 44476204  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 44476023 - 44476076
Alignment:
Q  137 acaaacatcttattcacattttctgtttagtttagacttcaaactattcatcat 190  Q
    |||||||||||||||| |||||| |||||||| ||||||||||  |||||||||    
T  44476023 acaaacatcttattcatattttccgtttagttgagacttcaaatcattcatcat 44476076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 44476248 - 44476293
Alignment:
Q  324 ttgtagcttcattacatagttaaatcaccgaacatcttgatgagca 369  Q
    |||||||| ||||||||||||||||||  ||||| |||||||||||    
T  44476248 ttgtagctgcattacatagttaaatcattgaacaccttgatgagca 44476293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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