View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_high_10 (Length: 421)
Name: NF1394_high_10
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_high_10 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 97 - 421
Target Start/End: Original strand, 28372066 - 28372390
Alignment:
| Q |
97 |
ccattttctcattttcaattcacaattcgttttacggtaacccactccattggttatgtccctttttatgtttcatgctcaaatatttaaacttgggttt |
196 |
Q |
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| T |
28372066 |
ccattttctcattttcaattcacaattcgttttacggtaacccactccatcggttatgtccctttttatgtttcatgctcaaatatttaaacttgggttt |
28372165 |
T |
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| Q |
197 |
gattttgattgttttgtttgtaatgatttcatttcggcttttgggtgttctgggtttccgaaaagtgcgtgtaaaatgtttgatgaaagtcctcaaaggg |
296 |
Q |
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| T |
28372166 |
gattttgattgttttgtttgtaatgatttgatttcggcttttgggtgttctgggtttccgaaaagtgcgtgtaaaatgtttgatgaaagtcctcaaaggg |
28372265 |
T |
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| Q |
297 |
atattgttgcttggacagctttgattaatgggtttgttaaaaacgatgttcctggtgaggcacaagtgatttgtggatatgagattgaagggcgttgtga |
396 |
Q |
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| T |
28372266 |
atattgttgcttggacagctttgattaatgggtttgtttaaaacgatgttcctggtgaggcacaagtgatttgtggatatgagattgaagggtgttgtga |
28372365 |
T |
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| Q |
397 |
ttgatggttttctatggttctgttt |
421 |
Q |
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| T |
28372366 |
ttgatggttttctatggttctgttt |
28372390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 97 - 421
Target Start/End: Complemental strand, 44769417 - 44769089
Alignment:
| Q |
97 |
ccattttctcattttcaattcacaattcgttttacggtaacccactccattggttatgtccctttttatgtttcatgctcaaatatttaaact----tgg |
192 |
Q |
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| T |
44769417 |
ccattttctcattttcaattcacaattcgttttacggtaacccactccatcggttatgtccctttttatgtttcatgctcaaatatttaaactaacttgg |
44769318 |
T |
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| Q |
193 |
gtttgattttgattgttttgtttgtaatgatttcatttcggcttttgggtgttctgggtttccgaaaagtgcgtgtaaaatgtttgatgaaagtcctcaa |
292 |
Q |
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| T |
44769317 |
gtttgattttgattgttttgtttgtaatgatttcatttcggcttttgggtgttctgggtttccgaaaagtgcgtgtaaaatgtttgatgaaagtcctcaa |
44769218 |
T |
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| Q |
293 |
agggatattgttgcttggacagctttgattaatgggtttgttaaaaacgatgttcctggtgaggcacaagtgatttgtggatatgagattgaagggcgtt |
392 |
Q |
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| T |
44769217 |
agggatattgttgcttggacagctttgattaatgggtttgttaaaaacgatgttcctggtgaggcacaagtgatttgtggatatgagattgaagggtgtt |
44769118 |
T |
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| Q |
393 |
gtgattgatggttttctatggttctgttt |
421 |
Q |
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| T |
44769117 |
gtgattgatggttttctatggttctgttt |
44769089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 171 - 407
Target Start/End: Original strand, 28198678 - 28198916
Alignment:
| Q |
171 |
atgctcaaatatttaaacttgggtttgattttgattgttttgtttgtaatgatttcatttcggcttttgggtgttctgggtttccgaaaagtgcgtgtaa |
270 |
Q |
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|||||||| | |||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| ||||||||| |
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| T |
28198678 |
atgctcaagtttttaaacttgggtttgatcatgattgttttgtttgtaatggtttcatttctgcttttgggtgttctgggtttatgaaaaatgcgtgtaa |
28198777 |
T |
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| Q |
271 |
aatgtttgatgaaagtcctcaaagggatattgttgcttggacagctttgattaatgggtttgttaaaaacgatgttcctggtgaggcac--aagtgattt |
368 |
Q |
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| T |
28198778 |
agtgtttgatgaaagtcctgaaagggatattgttgcttggacggctttgattaatgggtttgttaaaaatggtgttcctggtgaggcgcttaggtgtttt |
28198877 |
T |
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| Q |
369 |
gtggatatgagattgaagggcgttgtgattgatggtttt |
407 |
Q |
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| T |
28198878 |
gtggagatgagattgaagggtgttgtgattgatggtttt |
28198916 |
T |
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