View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_high_14 (Length: 386)
Name: NF1394_high_14
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 30 - 376
Target Start/End: Original strand, 29683322 - 29683668
Alignment:
| Q |
30 |
caactccattagcaagatcagaaccaaataatctctcatcgaaattgaacaattcatgaacttttgacacgagcttcggtgctagttgctcgagtgaatc |
129 |
Q |
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| T |
29683322 |
caactccaatagcaagatcagaaccaaataatctctcatcgaaattgaacaattcatgaacttctgacacgagcttcagtgctagttgctcgagtgaatc |
29683421 |
T |
|
| Q |
130 |
agagggaaagtcttggtggaacaagatagaccgaaaccaatctttaccctctcgaaagaaccttttgctgctaacttcttgaaaattgttgagtaaggtg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29683422 |
agagggaaagtcttggtggaacaagatagaccgaaaccaatctttaccctctcgaaagaaccttttgctgctaacttcttgataattgttgagtaaggtg |
29683521 |
T |
|
| Q |
230 |
ttaagacgtgtaactgagttagaatcaactgaatgcgagagaacatcgatatgaaaatttaaccgatcggtgggcatgagcttggggcgctgcacctcta |
329 |
Q |
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| T |
29683522 |
ttaagacatgtaactgagttagaatcaactgaatgcgagagaacatcgatatgaaaatttaaccaatcggtgggcatgagcttggggcgctgcacctcta |
29683621 |
T |
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| Q |
330 |
gattgtaattcatgcatcgaagatattcacattgctcttgattttgt |
376 |
Q |
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| T |
29683622 |
gattgtaattcatgcttcgaagatattcatattgctcttgatattgt |
29683668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 32 - 368
Target Start/End: Original strand, 35525835 - 35526171
Alignment:
| Q |
32 |
actccattagcaagatcagaaccaaataatctctcatcgaaattgaacaattcatgaacttttgacacgagcttcggtgctagttgctcgagtgaatcag |
131 |
Q |
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| T |
35525835 |
actccactagcaagattagaaccaaataatttctcattgaaatcaaacaattcatgaacttcgagcacgagcctttgtgctagttgctcaagtgattcag |
35525934 |
T |
|
| Q |
132 |
agggaaagtcttggtggaacaagatagaccgaaaccaatctttaccctctcgaaagaaccttttgctgctaacttcttgaaaattgttgagtaaggtgtt |
231 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||| | ||||| ||||||||||||||||||| ||||||||| ||| | || ||||||||| |
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| T |
35525935 |
agggaaagtcttggtggaacaagatagaccgaatccattcttgatcctcttgaaagaaccttttgctgctcacttcttgataatcatggaataaggtgtt |
35526034 |
T |
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| Q |
232 |
aagacgtgtaactgagttagaatcaactgaatgcgagagaacatcgatatgaaaatttaaccgatcggtgggcatgagcttggggcgctgcacctctaga |
331 |
Q |
| |
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||| ||||||||||||||||||||||| |||| || ||||||| ||| ||||| || ||||| | ||| ||||||||||||| |||||||||||| |
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| T |
35526035 |
aaggcgtgtaactgagttagaatcaaccgaatatgatagaacattgatgtgaaagactagtcgatcagctggcttgagcttggggcgttgcacctctaga |
35526134 |
T |
|
| Q |
332 |
ttgtaattcatgcatcgaagatattcacattgctctt |
368 |
Q |
| |
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||||| ||||||| | |||| |||||| ||||||||| |
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|
| T |
35526135 |
ttgtagttcatgctttgaaggtattcatattgctctt |
35526171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 33 - 369
Target Start/End: Original strand, 35548148 - 35548484
Alignment:
| Q |
33 |
ctccattagcaagatcagaaccaaataatctctcatcgaaattgaacaattcatgaacttttgacacgagcttcggtgctagttgctcgagtgaatcaga |
132 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| || |||| |||||||||||| |||| | ||| || | |||| |||||||| ||||||||| | |
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| T |
35548148 |
ctccattagcaaaattagaaccaaataatctctcgtcaaaatcgaacaattcatgtacttcttgcacaagtctttgtgcaagttgctcaagtgaatcaaa |
35548247 |
T |
|
| Q |
133 |
gggaaagtcttggtggaacaagatagaccgaaaccaatctttaccctctcgaaagaaccttttgctgctaacttcttgaaaattgttgagtaaggtgtta |
232 |
Q |
| |
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|| |||| |||||||||||||||||||| |||||||||||| ||||||| |||||||||||||| ||| ||||||| | |||||| ||||| ||||| |
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| T |
35548248 |
ggaaaagacttggtggaacaagatagactgaaaccaatcttgaccctcttcaaagaaccttttgcagctcacttcttcacaattgtaaagtaaagtgttg |
35548347 |
T |
|
| Q |
233 |
agacgtgtaactgagttagaatcaactgaatgcgagagaacatcgatatgaaaatttaaccgatcggtgggcatgagcttggggcgctgcacctctagat |
332 |
Q |
| |
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|| ||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||| ||| |||||| | || ||||| |||||||||||||||| |
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|
| T |
35548348 |
aggcgtgtaactgaattagaatcaaccgaatgcgagagaacatcaatgtgaaaatttaaccaatcagtgggcttaagtttgggacgctgcacctctagat |
35548447 |
T |
|
| Q |
333 |
tgtaattcatgcatcgaagatattcacattgctcttg |
369 |
Q |
| |
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| ||||||| |||||| |||||| | |||||||| |
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| T |
35548448 |
agcggttcatgcttcgaaggtattcatactgctcttg |
35548484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 140 - 363
Target Start/End: Original strand, 35522994 - 35523220
Alignment:
| Q |
140 |
tcttggtggaacaagatagaccgaaaccaatctttaccctctcgaaagaaccttttgctgctaacttcttgaaaattgttgagtaaggtgttaagacgtg |
239 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||| ||||||| ||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||| | |
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|
| T |
35522994 |
tcttggtgaaacaagatagacctaatccaatcttgaccctcttgaaagaaccttttgcagctcacttcttgataattgtggagtaaggtgttaagacgag |
35523093 |
T |
|
| Q |
240 |
taactgagttagaatcaa---ctgaatgcgagagaacatcgatatgaaaatttaaccgatcggtgggcatgagcttggggcgctgcacctctagattgta |
336 |
Q |
| |
|
|||||||||||||||||| | |||| || |||||| || |||||| ||||| | ||| ||||| | ||||| |||||| |||||||||||||||| |
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| T |
35523094 |
taactgagttagaatcaatggatcaatgtgaaagaacactgaaatgaaagtttaatctatcagtgggtttaagcttagggcgccgcacctctagattgta |
35523193 |
T |
|
| Q |
337 |
attcatgcatcgaagatattcacattg |
363 |
Q |
| |
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||||| | |||||| |||||| |||| |
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| T |
35523194 |
gttcatacttcgaaggtattcatattg |
35523220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 108 - 366
Target Start/End: Complemental strand, 35921991 - 35921745
Alignment:
| Q |
108 |
gtgctagttgctcgagtgaatcagagggaaagtcttggtggaacaagatagaccgaaaccaatctttaccctctcgaaagaaccttttgctgctaacttc |
207 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||| ||||| | ||||||||||||| ||| ||||| |
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| T |
35921991 |
gtgctagttgctcaagtgattcagacggaaagtcttggtggaacaagatagactgaa-----------ccctcatggaagaaccttttgcagctcacttc |
35921903 |
T |
|
| Q |
208 |
ttgaaaattgttgagtaaggtgttaagacgtgtaactgagttagaatcaactgaatgcgagagaacatcgatatgaaaatttaaccgatcggtgggcatg |
307 |
Q |
| |
|
| | |||||| |||||| |||||||| | |||| ||||||||||||||||||||| || ||||||| ||| ||||||||||||||| ||||| || |
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|
| T |
35921902 |
atcataattgtggagtaaagtgttaaggtgcgtaattgagttagaatcaactgaatgtgaaagaacat-gatgaaaaaatttaaccgatcattgggcgtg |
35921804 |
T |
|
| Q |
308 |
agcttggggcgctgcacctctagattgtaattcatgcatcgaagatattcacattgctc |
366 |
Q |
| |
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||||||||| ||||||||||||||||| | ||||||| |||||| |||||| ||||||| |
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| T |
35921803 |
agcttggggagctgcacctctagattgcacttcatgcttcgaaggtattcatattgctc |
35921745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 35555940 - 35555990
Alignment:
| Q |
42 |
caagatcagaaccaaataatctctcatcgaaattgaacaattcatgaactt |
92 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
35555940 |
caagatcagaatcaaataatctctcatcgaaatcgaacaattcatgaactt |
35555990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 336
Target Start/End: Complemental strand, 34988774 - 34988709
Alignment:
| Q |
271 |
aacatcgatatgaaaatttaaccgatcggtgggcatgagcttggggcgctgcacctctagattgta |
336 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| ||| |||| |||| ||||||| ||||||||| |
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|
| T |
34988774 |
aacatcgatgtgaaaatttaaccgatcagtgggcgtgatcttgaggcgatgcacctgtagattgta |
34988709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 35522879 - 35522939
Alignment:
| Q |
30 |
caactccattagcaagatcagaaccaaataatctctcatcgaaattgaacaattcatgaac |
90 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||| ||||||| |||| |||||||||||||| |
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|
| T |
35522879 |
caactcctttagcaatatcagatccaaataatttctcatcaaaatcaaacaattcatgaac |
35522939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 35923575 - 35923512
Alignment:
| Q |
30 |
caactccattagcaagatcagaaccaaataatctctcatcgaaattgaacaattcatgaacttt |
93 |
Q |
| |
|
|||||||||| ||| ||||||||| |||||| ||||||| |||| ||||||||||||| |||| |
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|
| T |
35923575 |
caactccattgacaatatcagaaccgaataatttctcatcaaaatcgaacaattcatgagcttt |
35923512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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