View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1394_high_23 (Length: 310)

Name: NF1394_high_23
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1394_high_23
NF1394_high_23
[»] chr3 (2 HSPs)
chr3 (1-120)||(45209528-45209645)
chr3 (197-294)||(45209724-45209821)
[»] chr5 (2 HSPs)
chr5 (201-294)||(674841-674933)
chr5 (29-119)||(675003-675091)
[»] chr4 (2 HSPs)
chr4 (1-119)||(27749546-27749659)
chr4 (224-294)||(27750159-27750228)
[»] chr6 (1 HSPs)
chr6 (215-291)||(22352476-22352552)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 45209528 - 45209645
Alignment:
Q  1 gatgctaataagctagaggttatctctcatatactcaaagatgtctatgtaaatgaagtgggggagaattcaaaacaagatacaataagagttgtatata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||    
T  45209528 gatgctaataagctagaggttatctctcatatactcaaagatgtctatgtaaatgaagtgggggagaattcaaaacaagatacaatatgagttg--tata 45209625  T
Q  101 aattgcaaagataaggtttc 120  Q
    ||||||||||||||||||||    
T  45209626 aattgcaaagataaggtttc 45209645  T

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Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 45209724 - 45209821
Alignment:
Q  197 gtctgagtaacacaaagctattttgttttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaacta 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45209724 gtctgagtaacacaaagctattttgttttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaacta 45209821  T

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Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 674933 - 674841
Alignment:
Q  201 gagtaacacaaagctattttgttttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaacta 294  Q
    |||||| |||||| ||||| || ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  674933 gagtaatacaaagatatttggtcttccattcttgctcaccatgtcagcttctatctt-gcaaatttcatagcaattggtttatattgttaacta 674841  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 675091 - 675003
Alignment:
Q  29 atatactcaaagatgtctatgtaaatgaagtgggggagaattcaaaacaagatacaataagagttgtatataaattgcaaagataaggttt 119  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || ||||||||  |||||||||||||||| ||||||    
T  675091 atatactcaaagatgtctaagtaaatgaagtggaggagaattcaaaacaagatataacaagagttg--tataaattgcaaagatgaggttt 675003  T

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Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 27749546 - 27749659
Alignment:
Q  1 gatgctaataagctagaggttatctctcatatactcaaagatgtctatgtaaatgaagtgggggagaattcaaaacaagatacaataagagttgtatata 100  Q
    |||||||||||||| | |||| ||||| ||||||||| ||||||||| ||||||||||||| | |||||||||||||||||   ||||||||||  ||||    
T  27749546 gatgctaataagctgggggttgtctctgatatactcatagatgtctaagtaaatgaagtggagaagaattcaaaacaagat---ataagagttg--tata 27749640  T
Q  101 aattgcaaagataaggttt 119  Q
    |||||||||||||||||||    
T  27749641 aattgcaaagataaggttt 27749659  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 27750159 - 27750228
Alignment:
Q  224 ttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaacta 294  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27750159 ttccattcttgctcaccatgtcagcttctatctt-gcaaatttcatagcaattgatttatattgttaacta 27750228  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 22352552 - 22352476
Alignment:
Q  215 tattttgttttccattctagctcaccatgtcagcttctatcttagcaaatttcatagcaattgatttatattgttaa 291  Q
    ||||| || ||||||||| | ||||||||||| |||||||| || |||||| |||||||||||||||| | ||||||    
T  22352552 tatttggtcttccattcttgttcaccatgtcaacttctatcgtaccaaattgcatagcaattgatttaaaatgttaa 22352476  T

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