View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_high_31 (Length: 279)
Name: NF1394_high_31
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 54 - 244
Target Start/End: Complemental strand, 51114900 - 51114710
Alignment:
| Q |
54 |
ccaattgcattggaaaaaagaacaaacgagatttctttgctcttcttgtttttgaaacttcagcaatgttggttattggtgtagtttgtctgaagagact |
153 |
Q |
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| T |
51114900 |
ccaattgcattggaaaaaagaacaaacgagatttctttgctcttcttgttttagaaacttcagcaatgttggttattggtgtagtttgtctgaagagact |
51114801 |
T |
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| Q |
154 |
aattcatttaccccttccttcttcatttgggattaaatttgttggttcaatatcctttctaattgctgattatatcttcttctggcctatg |
244 |
Q |
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| T |
51114800 |
aattcatttaccccttccttcttcatttgggattaaatttgttggttcaatatcctttctaattgctgattatatcttcttctggcctatg |
51114710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 51105344 - 51105155
Alignment:
| Q |
58 |
ttgcattggaaaaaagaacaaacgagatttctttgctcttcttgtttttgaaacttcagcaatgttggttattggtgtagtttgtctgaagagactaatt |
157 |
Q |
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| T |
51105344 |
ttgcattggcaagaaaaacaaacgagatttctttgcttttcttgttttagaaacttcagcaatgttggttactggtgtagtttgtctcaagagacttgct |
51105245 |
T |
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| Q |
158 |
catttaccccttccttcttcatttg------ggattaaatttgttggttcaatatcctttctaattgctgattatatcttcttctggcct |
241 |
Q |
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| T |
51105244 |
cattctcgccgtccttcttcatttggatcatggattaaaattgttggttcaatattctttctaattgctgataatttcctcttctggcct |
51105155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 48039336 - 48039397
Alignment:
| Q |
83 |
gatttctttgctcttcttgtttttgaaacttcagcaatgttggttattggtgtagtttgtct |
144 |
Q |
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| T |
48039336 |
gatttctttgcttttcttattcttgaagtttcagcaatgttggttactggtggagtatgtct |
48039397 |
T |
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