View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_high_32 (Length: 273)
Name: NF1394_high_32
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 48 - 264
Target Start/End: Original strand, 21766323 - 21766540
Alignment:
| Q |
48 |
agggggctataccaagcttcaaaacaaatttttg-atttataacaggtttaatttgtagcatccatggactaaagttagtaggtattgtaccaaaaaatc |
146 |
Q |
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| T |
21766323 |
agggggctatactgtgcttcaaaacaattttttttatttataactggtttaatttgtagcatctatggactaaagttagtaggtattgtaccaaaa-atc |
21766421 |
T |
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| Q |
147 |
gccagaaagaaatgttatttcaaattgtcacaatgtcactagttcccatttatggatttgtgcaatatgaagaatttaaga-ttttaatattgtatccat |
245 |
Q |
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| T |
21766422 |
gccagaaagaaatgttatttcaaattgtcacaatgtcactagttcccatttatggatttgtgcaatatgaagaatttaagagttttaatattgtatccat |
21766521 |
T |
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| Q |
246 |
acattgttgctagtataat |
264 |
Q |
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| T |
21766522 |
acattgttgctagtataat |
21766540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 32926714 - 32926649
Alignment:
| Q |
189 |
ttcccatttatggatttgtgcaatatgaagaatttaagattttaatattgtatccatacattgttg |
254 |
Q |
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| T |
32926714 |
ttcccatttatggatttgtgcaacatatataatttaagagtttaatattgtatccatacattgttg |
32926649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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