View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_high_33 (Length: 254)
Name: NF1394_high_33
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 54473070 - 54473315
Alignment:
| Q |
7 |
gcaccacagacaacatgattttcttttttgaaccagttacacagcttcactctcacctgtgtaagataatttgcttgcataagaggattttgcatctctt |
106 |
Q |
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| T |
54473070 |
gcaccatagacaacatgattttcttttttgaaccagttacacagcttcactctcacctgtgtaagataatttgcttgcataagaggattttgcatctctt |
54473169 |
T |
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| Q |
107 |
gtacgatgatgatttgcttaatgctgtatggacgccacattatcatgattcatatcagtataaaaaagtttttagggataataaatgtcctgcaattttg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54473170 |
gtacgatgatgatttgcttaatgctgtatggacgccacattatcatgattcatatcagtataaaaaagtttttagggataataaatgtcctgcaattttg |
54473269 |
T |
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| Q |
207 |
ttactttgagtttgagtacgagagtcaaatcatttgattcttgaat |
252 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
54473270 |
ttactttgagtttgagtacgagagtctagtcatttgattcttgaat |
54473315 |
T |
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