View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_high_4 (Length: 442)
Name: NF1394_high_4
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 21 - 413
Target Start/End: Original strand, 44780820 - 44781204
Alignment:
| Q |
21 |
acatcatcaccttgaaagtcgactaatttgatatgattttttggtagatgaaaaatgtgtaaaatctcgatgcaagagaggcaaagcttggaatgatgga |
120 |
Q |
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| T |
44780820 |
acatgatcaccttgaaagtcgactaatttgatatgattttttggtagatgaaaaatgtgtaaaatctcgatgcaagagaggcaaagcttggaatgatgga |
44780919 |
T |
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| Q |
121 |
aaagagaatgaagatagttacaaaatccaaaggctttgctttggggacaagaagccaaaattatatggctaaggtccccccacttgatttaacacaatca |
220 |
Q |
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| T |
44780920 |
aaagagaatgaagatagttacaaaatccaaaggctttgctttggggacaagaagccaaaattatatggctaaggtccccccacttgatttaacacaatca |
44781019 |
T |
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| Q |
221 |
cactaaatgaccagccttggtcggtcacttgaaatgctaatgggtccctatttgatcaattttgagaacgaaataaagaagaatgttatactcattcact |
320 |
Q |
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| T |
44781020 |
cactaaatgaccagccttggtcggtcacttgaaatgctaatgggtccctatttgatcaattttgagaacgaaataaagaagaatgttat--------act |
44781111 |
T |
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| Q |
321 |
cattcttcattaaaaggctcaactgtacagtttaatacacctttttcgttattcctttccttttcaaatgttaagtctctaataggatataag |
413 |
Q |
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| T |
44781112 |
cattcttcattaaaaggctcaactgtacagtttaatacacctttttcgttattcctttccttttcaaatgttaagtctctcataggatataag |
44781204 |
T |
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