View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_10 (Length: 429)
Name: NF1394_low_10
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 33 - 238
Target Start/End: Complemental strand, 7832815 - 7832617
Alignment:
| Q |
33 |
gatagtgaatatgcatatcctagaaaataaaagagattggtagtggtcaaaatcctaggaaacaaaggagatttaaaagaagttgttaaaagagattaga |
132 |
Q |
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| T |
7832815 |
gatagtgaatatgcatatcccagaaaataaaagagattggta-------aaatcctaggaaacaaaggagatttaaaagaagttgttaaaagagattaga |
7832723 |
T |
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| Q |
133 |
agtggtcaaaaccaaaggaaacaaaagcaccatcaccgattccttggatgatatgataatatgagtcttggttggatcaattcaattcaaatgagaagga |
232 |
Q |
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| T |
7832722 |
agtggtcaaaaccaaaggaaacaaaagcaccatcaccgattccttggatgatatgataatatgagtcttggttggatcaattcaattcaaatgagaagga |
7832623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 314 - 419
Target Start/End: Complemental strand, 7832569 - 7832464
Alignment:
| Q |
314 |
atggaatgaaagaacacaaaccatgaggcgacagtgactggagccgtaggagataacaatggagaagcttgcgcagaggaagaagactgaacagtttggc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7832569 |
atggaatgaaagaacacaaaccatgaggcgacagtgactggagccgaaggagataacaatggagaagcttgcgcagaggaagaagactgaacagtttggc |
7832470 |
T |
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| Q |
414 |
ctatga |
419 |
Q |
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| T |
7832469 |
ctatga |
7832464 |
T |
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